Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3701 ATGCATACGCATGTGTGGAAGCAGATCAGAGACAGGGAAGCTGGGAAATTACACGCACATTGTTTCGCGAATCGGATAAAATCCAATCGCATTTCGCAGCTCCAATTGTCGAATTACAAAGACATCGTTTCCGCTCACAAAGGCGCCATCAACTCCCTTCAGATTGATTCGACAGAGGGAAGATATTTGCTCGCCGCCGCATCCGATGCCTCGGTAGCCGTGTACGACGTTCAACGACCCACCGTTTACGAAGCAGGTGGCGTTATATCGAAACACAGGTCCATATTTGTCGTTGACAAGCAGCACCAACAAGGCCATAAATATGCCGTGTCCTCAGCTATATGGTATCCCATTGACACAGGCTTATTCGTCACTGGCTCATACGATCATCACATTAATGTTTGGGACACCAATACCACCCAGGTGGTGGTGAATTTCAAAATGCCTGGAAAGGTGCATAGGACTGCAATGTCCAATTTGTCAACGTCTCACATGCTTATTGCTGCTGGCACTGAGGATGTCCAGGTTCGCCTTTGTGATATTGCTTCCGGGGCTTTTGCTCACACTTTGTCTGGTCACCGTGATGGAGTAATGACTGTTGAATGGTCTAATTCAAGTGAATGGGTCTTGGTTACTGGGGGATGTGATGGTGCAATACGTTTTTGGGACATCAGGCGTGCTGGCTGTTTCCAACTTTTAGATCAGTCTCGGACTCAGCTTGGAAGACGCCCACCTATACTCAAACGCTCCATGATAACAAAGGATTCAAGTACAAAATTGCGTGCTGCACAAAAGAAACATGCTAATGGAAGTGGTAGCAGACAACTAACAATTGGCAGAGTTCCATCCAAGGGACCAATGAAGCAGAGGTTACATCCAGGAATGCTGTCTACTCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGGTTAAAAGCGACAGAGGATGGCATGTATCTACTCAGTGCAGGGTCTGATTCGAGATTGAGGTTGTGGGATGTTCAATCTGGCTGTGACACACTCGTGAATTTTGAAACAGTCCGCCTGCAAATAAACAAACCTCTTCAATTAGCCACCACTCAAGATGCAACCCTTGTTTTTGTTCCATGCATGAGATCTGTGAAAGCATTTGACATGTGGTCTGGGAACACATACTCAATATTACGTGGCCACTATGAATGTGTGAACTCTTGCTGGTTTAATCAACAAGATCAGGAACTGTACACTGGTGGAAATGATAGACAAATTCTTGTCTGGTCACCTGCTAGATCAGTCACTAATGAAATGGACGAAGGACCTGCTGAGGATCAGGATAACTGGAGTAGCTGA 1332 0.4617 MHTHVWKQIRDREAGKLHAHCFANRIKSNRISQLQLSNYKDIVSAHKGAINSLQIDSTEGRYLLAAASDASVAVYDVQRPTVYEAGGVISKHRSIFVVDKQHQQGHKYAVSSAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRTAMSNLSTSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQLLDQSRTQLGRRPPILKRSMITKDSSTKLRAAQKKHANGSGSRQLTIGRVPSKGPMKQRLHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVQSGCDTLVNFETVRLQINKPLQLATTQDATLVFVPCMRSVKAFDMWSGNTYSILRGHYECVNSCWFNQQDQELYTGGNDRQILVWSPARSVTNEMDEGPAEDQDNWSS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3701 443 Gene3D - 6 424 IPR015943 GO:0005515
Ssu1g3701 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 103 139 - -
Ssu1g3701 443 ProSitePatterns Trp-Asp (WD) repeats signature. 321 335 IPR019775 -
Ssu1g3701 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 225 IPR001680 GO:0005515
Ssu1g3701 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 103 145 IPR001680 GO:0005515
Ssu1g3701 443 SMART WD40_4 183 223 IPR001680 GO:0005515
Ssu1g3701 443 SMART WD40_4 292 334 IPR001680 GO:0005515
Ssu1g3701 443 SMART WD40_4 91 136 IPR001680 GO:0005515
Ssu1g3701 443 SMART WD40_4 382 421 IPR001680 GO:0005515
Ssu1g3701 443 SMART WD40_4 36 76 IPR001680 GO:0005515
Ssu1g3701 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 421 - -
Ssu1g3701 443 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 6 443 IPR042238 GO:0006283
Ssu1g3701 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515
Ssu1g3701 443 Pfam WD domain, G-beta repeat 104 136 IPR001680 GO:0005515
Ssu1g3701 443 Pfam WD domain, G-beta repeat 188 223 IPR001680 GO:0005515
Ssu1g3701 443 Pfam WD domain, G-beta repeat 303 334 IPR001680 GO:0005515
Ssu1g3701 443 Pfam WD domain, G-beta repeat 386 421 IPR001680 GO:0005515
Ssu1g3701 443 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Ssu1g3701 443 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Ssu1g3701 443 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Ssu1g3701 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 225 - -
Ssu1g3701 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 338 - -
Ssu1g3701 443 MobiDBLite consensus disorder prediction 264 290 - -
Ssu1g3701 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 85 IPR001680 GO:0005515
Ssu1g3701 443 SUPERFAMILY WD40 repeat-like 42 423 IPR036322 GO:0005515
Ssu1g3701 443 ProSitePatterns Trp-Asp (WD) repeats signature. 210 224 IPR019775 -
Ssu1g3701 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 421 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3701 163 338 Miscellaneous Gene Families AT5G08390 23.864 3.85e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3701 K10570 - gmx:100790433 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3701 1 93260057 93263515 Ssu1g3701 1 93260057 93263515 ECH