Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3685 atgtcATGGCTGGCTCGTTCCTTCGCAAACTCTCTCCGACTCGATGGCGACGGAGACGACGAAAACGACATCGTACTGGATCCACCTACCACGTCATCGAGAGACCCCCCGCAACAGCAACAGCATCACCCGCGAGAAAATGCGCTCGGATCAGAACCAGAAGAAGACGAAGACGAAGAAACGCAAGGGCGCGGAGTCAAAGAGGACCTCGACGAAATCAAGCAAACCCTAACCCGTCAGTTTTGGGGAATGGCCTCCTTCCTCGCTCCGCCCCCAACAAATTCTCAATCCGATCACTCTTCCTTCATTTCCAATCATCGCTCTGTTTCTCCGAATGGAGAGCCACAACTGGACGACGCTGCAGCGATTTCCGATCACTCTTCGGACGCGGAACAAGGGAACGGTCCCGAACCGAATTCGGTTTCGTTCGGATCCGATTCGGAAGGGAATTGTGGTCTCGAACAACGCGCGGTTGGAATTACCGAAGAGGTGCTGGCATTCGCGATGAACATCGCCATGCATCCCGAGACGTGGTTGGATTTTCCTATTGATGAGGAAGACGACACCGACGATTTTGACATGTCTGATGCACAACAAGAGCATGCCGCGGTTGTTGAAAGACTAACTCCTAGGTTAGCTGCGCTCAGAATTGAACTATGTCCTTGCCATATGAGTGAAAGTTACTTCTGGAAAGtctattttgttcttttgcaTTCAAGGCTTAATAAAGAAGATGCAGGGATTTTGTCTACACCCCAGGTCATGGCAGCCAGAGCAATGTGGATGCAGGAATTGCATAAACAAACAAAGcctgaatttgaaatttttggaaGAAGCACTTCCTACTCAAGAGACAATGCACAGCATGATGATTTTACTCCCAACTTATTAGATGACGCTTATTCTGATGACATGCCTAATCATACATATGGATATAGAACTACCTCTTTGTCCATGATGCCAGATTTTGAGACTCAGAAGCACATAGTTGAAAGTTTTGGAACACATTTCACTGATAAGTCTGTTATTGAggaaattcaattattaaaactgAAAACAAGGATCTAA 1068 0.4504 MSWLARSFANSLRLDGDGDDENDIVLDPPTTSSRDPPQQQQHHPRENALGSEPEEDEDEETQGRGVKEDLDEIKQTLTRQFWGMASFLAPPPTNSQSDHSSFISNHRSVSPNGEPQLDDAAAISDHSSDAEQGNGPEPNSVSFGSDSEGNCGLEQRAVGITEEVLAFAMNIAMHPETWLDFPIDEEDDTDDFDMSDAQQEHAAVVERLTPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKEDAGILSTPQVMAARAMWMQELHKQTKPEFEIFGRSTSYSRDNAQHDDFTPNLLDDAYSDDMPNHTYGYRTTSLSMMPDFETQKHIVESFGTHFTDKSVIEEIQLLKLKTRI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3685 355 MobiDBLite consensus disorder prediction 87 148 - -
Ssu1g3685 355 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 351 - -
Ssu1g3685 355 MobiDBLite consensus disorder prediction 89 112 - -
Ssu1g3685 355 Pfam BSD domain 189 245 IPR005607 -
Ssu1g3685 355 ProSiteProfiles BSD domain profile. 189 241 IPR005607 -
Ssu1g3685 355 SUPERFAMILY BSD domain-like 159 245 IPR035925 -
Ssu1g3685 355 MobiDBLite consensus disorder prediction 1 70 - -
Ssu1g3685 355 Gene3D BSD domain 149 248 IPR035925 -
Ssu1g3685 355 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 351 - -
Ssu1g3685 355 SMART wurzfinal6 189 241 IPR005607 -
Ssu1g3685 355 MobiDBLite consensus disorder prediction 26 46 - -
Ssu1g3685 355 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3685 Ssu-Chr1 92916577 92919341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3685 159 239 EF-hand Containing Proteins AT1G69030 31.868 1.86e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3685 - - gmx:100794286 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3685 1 92916577 92919341 Ssu1g3685 1 92916577 92919341 ECH