Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3675 ATGGCGCCACCGTTGTTCAATTGGGGGGTGAAGGACACACACAGGGGAACCCCAGTGGTGGTGAAGATGGAGAACCCGAATTGGTCCATGGTGGAACTCGAGGGTCCTGAGGAAGAAGACTTACTGGTACCAGATTCTTCTTCGGGCGTTGCGAGGAACAAAGGAAAAGGAAGGGGCAAAAACGCGAAACAGCTCACGTGGGTTCTCCTCCTCAAAGCCCACCGCGCCGCGGGTTGCCTGACCTCCCTCGCGCCGGCATTGTGGGGGCTGGTCTCCGCCGTGAAGCGCCGCGTCGCCGCCGGGAAGACCGACGCCGACACCGACGGCGGCCGAGAGAACGAGAACCCCGCCGTGAAGACGCGCTTTTATTCCTGCATCAAGGTCTTTCTCTGGCTATCCGTTTCGCTCTTGTGCTTCGAGGTCGCCGCGTACTTCAGAGGGTGGCATTTCGGCGCGGCGAGTCTTCAGTGGGAGCATTTGCTATGGGCACGCGCGTTTGGCGTTAAGGATTTCTTCGATTGGCTATACGCGCGGTGGGTTTTCGTCCGCGTGGAGTACCTCGCTCCCCCTCTGCAGTTTCTAACCAATGCGTGTATTGTGCTGTTCCTTATCCAGAGTTTGGATAGGCTTGTTCTCTGTTTGGGGTGTTTCTGGATCCGGTTTAAGAAGATCAAGCCTGTCCCCAAAGGTGGGGGGGTGGTAGATCTTGAATCAGGAGAGAAACGTTTTGGTTTTTTCCCAATGGTCCTCGTGCAGATCCCCATGTGCAATGAGAAAGAGGTTTATCAGCAGTCGATTGCTGCGGTGTGTAATTTGGATTGGCCGAAGGGGAAGTTGTTGATTCAGGTTTTGGATGATTCGGATGACCCAACGACGCAGTTGCTGATCAAGGAGGAGGTGCAGCAGTGGCAACAAGAGGGTGCCAACATTTTGTACCGGCATCGCGTGATTAGAGATGGGTACAAGGCTGGGAATTTGAAATCTGCTATGAATTGTAGCTACGTGAAAGACTACGAGTTTGTTGCAATTTTTGATGCAGATTTTCAGCCTACTCCGGATTTTCTCAAGAAAACTGTTCCTCATTTTGAGGATAATGACGAATTAGGGCTTGTTCAAGCGAGATGGTCCTTTGTGAACAAGGATGAGAACCTGCTTACGAGGTTGCAGAATGTTAACCTGTCTTTCCATTTTGAGGTGGAACAGCAAGTGAATGGGATTTTCATCAACTTCTTTGGGTTCAATGGAACCGCGGGAGTGTGGAGGATAAAGGCTTTGGAGGATGCAGGTGGTTGGTTGGAGAGGACTACTGTTGAGGACATGGACATTGCCGTTCGAGCTCATCTTCATGGCTGGAAAttcattttcctcaatgatgttGAGTGCCAATGTGAGTTACCGGAATCTTATGAGGCTTACAGGAAACAGCAGCATAGATGGCATTCTGGGCCAATGCAATTGTTCCGCCTTTGTTTGCCTGATATCATACGGTCCAagATAAGTGTGTGGAAGAAATTCAACATGatatttctcttcttccttctcaGAAAACTAATACTACCATTCTATTCATTCACCTTGTTTTGTATAATCTTGCCTATGACAATGTTCGTGCCGGAGGCCGAGCTTCCTGCGTGGGTTGTTTGTTACATCCCTGCTGCCATGTCTTTTCTCAACATTCTTCCAGCACCAAAGGCCTTCCCCTTTATTGTCCCTTATCTCCTATTTGAGAACACCATGTCAGTTACCAAATTCAATGCCATGATCTCAGGCCTGTTCCAGCTCGGTAGTGCATATGAGTGGGTGGTCACCAAGAAATCCGGTCGTTCCTCCGAGGGTGATTTGGTTTCATTGATTGAGAAAGGACCAAAGCATCAAAGAGGGTCCTCAGCACCCGATCTGGAGGAAATGAAAGAGGAACTTCGAAGGCAGGCGCAGAAGAATGCTTctaagaagaagagaaagcatAACAGAATATATATGAAGGAGCTTGCTTTGGCCTTTCTACTTCTAACAGCCTCAGCAAGGAGTCTCCTCTCTGCACAAGGGATCCACTTCTACTTCTTGTTATTCCAGGGCATATCATTCTTGTTGGTTGGTCTAGACTTGATTGGTGAACAGGTGgactga 2127 0.4819 MAPPLFNWGVKDTHRGTPVVVKMENPNWSMVELEGPEEEDLLVPDSSSGVARNKGKGRGKNAKQLTWVLLLKAHRAAGCLTSLAPALWGLVSAVKRRVAAGKTDADTDGGRENENPAVKTRFYSCIKVFLWLSVSLLCFEVAAYFRGWHFGAASLQWEHLLWARAFGVKDFFDWLYARWVFVRVEYLAPPLQFLTNACIVLFLIQSLDRLVLCLGCFWIRFKKIKPVPKGGGVVDLESGEKRFGFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKGKLLIQVLDDSDDPTTQLLIKEEVQQWQQEGANILYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKKTVPHFEDNDELGLVQARWSFVNKDENLLTRLQNVNLSFHFEVEQQVNGIFINFFGFNGTAGVWRIKALEDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRSKISVWKKFNMIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPAAMSFLNILPAPKAFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLIEKGPKHQRGSSAPDLEEMKEELRRQAQKNASKKKRKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVD 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3675 708 Pfam Glycosyl transferase family group 2 341 537 IPR001173 -
Ssu1g3675 708 Coils Coil 633 653 - -
Ssu1g3675 708 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 11 707 - -
Ssu1g3675 708 PANTHER - 11 707 - -
Ssu1g3675 708 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 242 464 IPR029044 -
Ssu1g3675 708 SUPERFAMILY Nucleotide-diphospho-sugar transferases 249 526 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3675 Ssu-Chr1 92643565 92646251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3675 4 708 Miscellaneous Gene Families AT4G07960 76.741 0.0 1079
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3675 - - gmx:100805969 1301.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3675 1 92643565 92646251 Ssu1g3675 1 92643565 92646251 ECH