LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g3671	ATGAACATGCTGTCTAGGAAGGCAAGTCAGGGTTGTCATGGCCAAGACTCTTCTTACTTTCTAGGATGGCAAGAGTATGACAAGAATCCTTATCACCCCATTCAAAACTCAACCGGAATCATTCAGATGGGACTTGCAGAGAATCAGCTTTCATTTGACCTTCTTAAATCATGGCTTCGAAGAAATCCTGACATAGTGGGGTTGAAGAACGATGGGGTATCCGTGTTTAGAGAGCTTGCTCTGTTCCAGGATTACCACGGGTTACCTgctttaaaaaatGAACTGGTGGACTTTATGGCAAAAATAAGAGGAAATGGAATCAAATTTGCTCCGGAGAAGCTCGTCCTCGCAGCCGGCGCAACTCCCGCGAATGAGATTCTGATGTTTTGTCTTGCTGATCCAGGGGAGGCTTTCATTCTTCCCACACCGTATTATCCTGGGTTCGATAGAGATTTGAAATGGCGAACTGGGGTTGAGATTGTTCCAATGCATTGCTCGAGCTCAAATGGCTTCAGAATCACTTCCTGTGCTTTAGAACAAGCTTATCAACAAGCACAAAAATTGCATCTCAATGTCAAAGGGGTCTTAATAACTAACCCGTCGAACCCACTTGGCATAACCATGACCAAAACAGAGCTTAACGACCTAGTTGATTTCGCAATTGACAAGAACATTCACATAATAAGCGACGAAATCTACTCCGGGACGGTCTTCAACTCACCCAGATTCATAAGCATCATGGAAGTCGTGAACGAGAGAATTAGTGTCAATAACACTACTAGCATTTGGAACCGCATTCACATCGTTTACAGTCTTTCCAAAGACCTTGGGGTACCAGGATTTCGGGTGGGAATGATTTACTCCAATAACGAAACGGTTGTGGCTGCTGCCACCAAAATGTCAAGCTTTGGATTGGTGTCCTCGCAAACTCAGTATTTGGTTGCCAACTTACTTAAGGACAAGAAATTCACTTTCAAGTACATGGAAGAGACTCACAGGAGATTAAAGAGGCGCAAGGAAATGCTTGTATCTGGCCTCAGAAACGCGGGGATTCGGTGTTTGAAAAGCAATGCTGGTTTGTTCTGTTGGGTGGACATGAGACATCTACTAAGCTCTGCCACTTTTGAGGCAGAGAAGGAGCTTTGGAAGAGGATTCTTTGCCAAGTTGGATTGAACATATCCCCTGGGTCTTCTTGCCACTGCTGTGAACCTGGGTGGTTCAGGGTATGCTTTGCTAACATGTCCGAAGACACATTAAAAGTCGCAATGCGACGGATGAAGGCCTTCACGGACTCAAACATCTCTGCTGTCAACGACGGTAATAAGAGGGTCCATTGCTAA	1341	0.4474	MNMLSRKASQGCHGQDSSYFLGWQEYDKNPYHPIQNSTGIIQMGLAENQLSFDLLKSWLRRNPDIVGLKNDGVSVFRELALFQDYHGLPALKNELVDFMAKIRGNGIKFAPEKLVLAAGATPANEILMFCLADPGEAFILPTPYYPGFDRDLKWRTGVEIVPMHCSSSNGFRITSCALEQAYQQAQKLHLNVKGVLITNPSNPLGITMTKTELNDLVDFAIDKNIHIISDEIYSGTVFNSPRFISIMEVVNERISVNNTTSIWNRIHIVYSLSKDLGVPGFRVGMIYSNNETVVAAATKMSSFGLVSSQTQYLVANLLKDKKFTFKYMEETHRRLKRRKEMLVSGLRNAGIRCLKSNAGLFCWVDMRHLLSSATFEAEKELWKRILCQVGLNISPGSSCHCCEPGWFRVCFANMSEDTLKVAMRRMKAFTDSNISAVNDGNKRVHC	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g3671	446	Gene3D	-	63	320	IPR015421	GO:0003824
	Ssu1g3671	446	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	76	92	-	-
	Ssu1g3671	446	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	297	320	-	-
	Ssu1g3671	446	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	113	133	-	-
	Ssu1g3671	446	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	225	248	-	-
	Ssu1g3671	446	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	265	289	-	-
	Ssu1g3671	446	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	189	213	-	-
	Ssu1g3671	446	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	43	69	-	-
	Ssu1g3671	446	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	135	156	-	-
	Ssu1g3671	446	Gene3D	Aspartate Aminotransferase, domain 1	29	425	IPR015422	GO:0003824
	Ssu1g3671	446	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	271	284	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Ssu1g3671	446	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	3	436	-	-
	Ssu1g3671	446	Pfam	Aminotransferase class I and II	41	425	IPR004839	GO:0009058\|GO:0030170
	Ssu1g3671	446	SUPERFAMILY	PLP-dependent transferases	13	429	IPR015424	-
	Ssu1g3671	446	CDD	AAT_like	77	428	-	-
	Ssu1g3671	446	PANTHER	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 11	3	436	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g3671	Ssu-Chr1	92536047	92541995	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g3671	K01762		-	gmx:100803507	791.956

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g3671	1	92536047	92541995	Ssu1g3671	1	92536047	92541995	ECH