Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3664 ATGAAAAACATACATGAGATCAATGCAGGAAACCACTCTGAGaaaatgaaggaaaacaTCTCTGGTCCTAGTGGGAGCGAGGCTActaatattttactaaataatgaCTTTTCTGACGGGCTGAACTCTTGGCATCTCAATTTCTGTGATGGCTATGTAGTTTCCGCTGAATCAGGTCCTCAAAGAGGAATGACGATGGACTCAGATGGTAATTATGCTGTTATCACAAACCGTAAGGAATGCTGGCAAGGTCTTGAGCAAGATATCACAGACAAAATTTCTGTTGGTTCCACTTACATGGTTTCAGCTTTTGTTGGAGTATCTGAGCTTACTCCGGGGTCAACTGATGTTATAGCTACTCTGAAACTAGAAAATGATGATTCAGCCACTAGCTACTTGTGCATTGGAAGAACATCTTGCATCAAGGGTAGCTGGGAAAAGTTGAAAGGGTCATTTTCATTGGCATCTAAGCCTGATcgagttatattttatttggaagGACCTGCTCCTGGAGTTGACCTGCTTATACAATCAGTGGTCATCACCTGCTCCAGTCCAAATGATTATGAATATCATAAGACAACAAACAAGGGATCTGTTTCCACTGAAGATGAAAGCATCATAATAAACCCCCAGTTTGAGGATGGCCTGAACAATTGGTCTGGGAGAGGCTGCAAGATTGCGTTACATGATTCCATGGGAGACGGGAAAATTCTTCCTAAGTTTGGTAAATTCTTTGCATCTGCAACAGAACGTACACAAAGCTGGAATGGAATTCAGCAGGAGATCACTGGAAGGGTCCAGCGCAAGCTTGCCTATGAGGTTACTGCTGTAGTTCGGATATTTGGGAACAATATCACCCCTTCTGATGTAAGGGCTACTTTGTGGGTTCAAGCACCAGATCTTCGGGAGCAGTATATAGGCATTGCCAAGGTGCAGGCAACAGATACAGATTGGGTTCAAATGCAAGGAAAGTTCCTTCTAAATGGTTCCCCATCAAAAGTAGTAGTTTATTTAGAAGGTCCCCCTCCAGGCACTGACATTCTTGTCAATACTTTGGTTATAAAACATGCAGCTAAAACACCACCTTCAACACCCCCGGATTGTGAGGGTGCTGCTTATGGtgttaatataattgaaaacaGTAATCTGGCCAATGGCACCAACGCGTGGTTTCCCCTTGGGAATTGTACTTTGAGCGTTGGAACTGGTTCACCACGTATAATTCCACCAATGGCAAGGGACTCTCTTGGGCCTCATGAATCCTTAAGTGGGCGCTACATCCTTGTAACCAATCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACCGAGAAATTGAAACTCTTTCTAACTTACCAAGTATCTGCTTGGGTCCGAGTTGGTTCTGGATCAACTGGGCCTCAGAATGTGAATGTTGCCCTTAGTGTTGACAACCAGTGGGTCAACGGGGGACAAGTTGAGGTTGCTGATGACAGGTGGCACGAAATTGGTGGGTCTTTTAGAATTGAAAAGCAGCCATCTAAAGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGACTTAATGGTTGCCGGACTTCAAATTTTTGCCGTTGATAGACGGGCaaggtttaaatatttaaggAGGCAGACAGACAAGATCCGTAAGCGTGATATTGTCCTAAAATTCTCTGGGCTGGACTCAAGCGGAAATCTTGGAACCTTGGTGAGAGTTAGACAAATACAAAACGATTTTCCCATTGGATCGTGCATTAGTAGAACCAATATTGACAATGAAGATTTTGTTGACTTCTTTGTGAAACACTTTAACTGGGCTGTTTTTGGGAATGAGTTGAAGTGGTATTGGACTGAGCCACAGCAAGGGAATTTGAATTACAAGGATGCTGATGAAATGTTAGACTTATGTCAGAAGAACAACATTGACACCCGGGGTCATTGTATCTTCTGGGAAGTGGATGGCACCGTTCAGCAATGGATCAAATCACTGAATAAAACCGATTTGATGGCAGCTGTCCAAAACCGCTTAAATGGCTTATTGACTCGCTACAAGGGCAAGTTCAGGCACTATGATGTTAACAATGAAATGTTGCACGGTTCGTTTTATCAAGATAGACTAGGTAAGGATATAAGGGCAAACATGTTCAAGACTGCACACACACTAGATCCATCTGCTACCCTATTTGTGAATGACTATCATGTTGAAGATGGATGTGACCCCAGATCATCCCCAGAAAAATACATTCAGCATATTCTTGATTTGCAAGGGCAAGGTGCCCCAGTTGGGGGAATTGGAATTCAAGGTCACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCCCTTGATAAATTGGGCACTCTTGGTATGCCAATATGGTTTACTGAGCTTGATGTGTCTTCCACTAATGAATATGTCAGAGCTGATGATCTAGAAGTTATGCTGAGGGAAGCTTTGGCACACCCTGCCATAGATGGTGTAATGCTCTGGGGATTTTGGGAGTTGTTTATGAGCCGGGAAAATTCACACTTGGTGAATGCAGAAGGTGACCTCAACGAAGCAGGGAAAAGATACCTTGCTCTCAAACAAGAGTGGTTATCTCACAGCCACGGTTATGTTGATGAGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACGACGTGGAAGTTGTGACCTTAGCAAAGAGAGTTTCTAAGACATTCGTTGTTGACAAGGGTGACTCGTCACTGGTGGTATCAATCGATTTATAA 2763 0.4253 MKNIHEINAGNHSEKMKENISGPSGSEATNILLNNDFSDGLNSWHLNFCDGYVVSAESGPQRGMTMDSDGNYAVITNRKECWQGLEQDITDKISVGSTYMVSAFVGVSELTPGSTDVIATLKLENDDSATSYLCIGRTSCIKGSWEKLKGSFSLASKPDRVIFYLEGPAPGVDLLIQSVVITCSSPNDYEYHKTTNKGSVSTEDESIIINPQFEDGLNNWSGRGCKIALHDSMGDGKILPKFGKFFASATERTQSWNGIQQEITGRVQRKLAYEVTAVVRIFGNNITPSDVRATLWVQAPDLREQYIGIAKVQATDTDWVQMQGKFLLNGSPSKVVVYLEGPPPGTDILVNTLVIKHAAKTPPSTPPDCEGAAYGVNIIENSNLANGTNAWFPLGNCTLSVGTGSPRIIPPMARDSLGPHESLSGRYILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRVGSGSTGPQNVNVALSVDNQWVNGGQVEVADDRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMVAGLQIFAVDRRARFKYLRRQTDKIRKRDIVLKFSGLDSSGNLGTLVRVRQIQNDFPIGSCISRTNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNNIDTRGHCIFWEVDGTVQQWIKSLNKTDLMAAVQNRLNGLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHTLDPSATLFVNDYHVEDGCDPRSSPEKYIQHILDLQGQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGMPIWFTELDVSSTNEYVRADDLEVMLREALAHPAIDGVMLWGFWELFMSRENSHLVNAEGDLNEAGKRYLALKQEWLSHSHGYVDEQGQFSFRGFSGTYDVEVVTLAKRVSKTFVVDKGDSSLVVSIDL 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3664 920 Gene3D - 24 183 - -
Ssu1g3664 920 Gene3D - 371 533 - -
Ssu1g3664 920 Gene3D - 199 358 - -
Ssu1g3664 920 Pfam Glycosyl hydrolase family 10 577 834 IPR001000 GO:0004553|GO:0005975
Ssu1g3664 920 Coils Coil 846 866 - -
Ssu1g3664 920 PANTHER GLYCOSYL HYDROLASE 21 183 IPR044846 GO:0004553|GO:0005975
Ssu1g3664 920 SUPERFAMILY Galactose-binding domain-like 374 535 IPR008979 -
Ssu1g3664 920 SMART glyco_10 614 864 IPR001000 GO:0004553|GO:0005975
Ssu1g3664 920 SUPERFAMILY Galactose-binding domain-like 204 358 IPR008979 -
Ssu1g3664 920 MobiDBLite consensus disorder prediction 1 24 - -
Ssu1g3664 920 Gene3D Glycosidases 568 874 - -
Ssu1g3664 920 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 791 801 IPR031158 -
Ssu1g3664 920 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 565 863 IPR001000 GO:0004553|GO:0005975
Ssu1g3664 920 SUPERFAMILY (Trans)glycosidases 571 871 IPR017853 -
Ssu1g3664 920 Pfam Carbohydrate binding domain 30 170 IPR003305 GO:0016798
Ssu1g3664 920 Pfam Carbohydrate binding domain 206 342 IPR003305 GO:0016798
Ssu1g3664 920 Pfam Carbohydrate binding domain 377 520 IPR003305 GO:0016798
Ssu1g3664 920 PRINTS Glycosyl hydrolase family 10 signature 645 657 IPR001000 GO:0004553|GO:0005975
Ssu1g3664 920 PRINTS Glycosyl hydrolase family 10 signature 759 771 IPR001000 GO:0004553|GO:0005975
Ssu1g3664 920 PRINTS Glycosyl hydrolase family 10 signature 727 738 IPR001000 GO:0004553|GO:0005975
Ssu1g3664 920 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 194 920 - -
Ssu1g3664 920 SUPERFAMILY Galactose-binding domain-like 29 185 IPR008979 -
Ssu1g3664 920 PANTHER GLYCOSYL HYDROLASE 194 920 IPR044846 GO:0004553|GO:0005975
Ssu1g3664 920 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 21 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3664 Ssu-Chr1 92329763 92334049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3664 6 920 Glycoside Hydrolase AT1G58370 68.730 0.0 1335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3664 - - lja:Lj0g3v0316669.1 1521.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3664 1 92329763 92334049 Ssu1g3664 1 92329763 92334049 ECH