Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3662 ATGAAGAGAGGGAAGGATGATGAGAAGGTGATGGGGCCAATGTTCCCTAGACTACATGTGAATGATACAGAGAAGGGAGGCCCAAGAGCACCACCTAGGAATAAGATGGCCCTCTATGAGCAGTTTAGTATTCCCTCTCAAAGGTTCAATTCAGGTGTTCTGCCACTCAACCCAAATATTTCCAGTAATACAGTTCCCCCAGCATCCTCAAGTCAGGCGACTGTCCCTGAGAGAAGTTATGTCTTCCCAGGTCATTTGCCACTGCAAACACCTATTCGTCGAGCTGAAAAATGTATCTCTCGCCAATCAGAAGGGGCAAATTTGAGTGCTTCTCTTGAACAGGGAAAGAAGGTAGATGAAGATGACTTCAGGGTTCCTGTATACATTCATTCAAGGATTGGTCAATGTAACGATAAAAGTGTTGAGAGTTTCGATGGGAAGAAACTCACTCCTACAGGCTCTAGGTATTTTGGTGGTTCTGTGGCAGGGCAAAGTGAGTGTGAAAGGGATCCAAGGCGATTTGGCTCCTCACTTGTCAATATGAGAAAAGATGTGAGAAGTGAGACTGATGGTCTTCCACAAGTAAGCGCAAGTAAGGAGCAGCCGTTAATGTCTGTAAGAAGCAAATCAACTAGAGAAAATATTGACACCTCAGTAAGGCAAGCCAAGGTGACTCCAAATCAAGAGTTTCAAGATTGTCATGTATCAAAACTTAACAGATTACGGCGAGGTGATGCTTGCTTACGGTGGGACTGTGGAGTGGGGCCCCAATCCAATGATATTGGACATAGTGGTTGTGTTGTTGAGTCTGCAAGGGAGACAAACAAGGGAAATGCCCTTACAGCAAACCAAATCTGTCCAGCTGAGGCAATCAATGACACTGAACATCATGATACCAGGACTGGCAATCCAATAAATAGGGGAAACTTAAACAAAAGTGACAATGCTTCCAAGATCTCCATGGTAGAAAATTTATCAACAGTGAATATTTCTCCAGATGATGTTGTTGGAATAATAGGTCAAAAACATTTCTGGAAAGCTAGAAGAGCAATTGCCAATCAACAGAGAGTGTTTGCTGTCCAAGTGTTTGAGTTGCATAGACTGATGAAGGTCCAACAGCTGATTGCTGGATCACCAGATATTTTGCTTGAAGATGGTGCTTTTCTGGGAAAGTCTCCTCCAAAGGGATCTGCTCCCAAAAAACTGTCACTGGAATATGTTGTAAAACCTCGGCAACAAAACCTTAAGCTGCAAAGATGA 1260 0.4349 MKRGKDDEKVMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQFSIPSQRFNSGVLPLNPNISSNTVPPASSSQATVPERSYVFPGHLPLQTPIRRAEKCISRQSEGANLSASLEQGKKVDEDDFRVPVYIHSRIGQCNDKSVESFDGKKLTPTGSRYFGGSVAGQSECERDPRRFGSSLVNMRKDVRSETDGLPQVSASKEQPLMSVRSKSTRENIDTSVRQAKVTPNQEFQDCHVSKLNRLRRGDACLRWDCGVGPQSNDIGHSGCVVESARETNKGNALTANQICPAEAINDTEHHDTRTGNPINRGNLNKSDNASKISMVENLSTVNISPDDVVGIIGQKHFWKARRAIANQQRVFAVQVFELHRLMKVQQLIAGSPDILLEDGAFLGKSPPKGSAPKKLSLEYVVKPRQQNLKLQR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3662 419 MobiDBLite consensus disorder prediction 191 214 - -
Ssu1g3662 419 PANTHER FLOWERING PROTEIN, PUTATIVE-RELATED 1 416 - -
Ssu1g3662 419 MobiDBLite consensus disorder prediction 185 214 - -
Ssu1g3662 419 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g3662 419 PANTHER PROTEIN EARLY FLOWERING 3 1 416 IPR039319 GO:2000028
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3662 Ssu-Chr1 92266020 92269362 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3662 K12125 - gmx:100793561 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3662 1 92266020 92269362 Ssu1g3662 1 92266020 92269362 ECH
Ssu1g3662 1 92266020 92269362 Ssu5g0376 5 8054810 8059656 ECH