Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3646 ATGAACGCAGCATCATATTCTGCTCTTCCTTCTACGTTTCGCAGCCTCGATCGGAATTTCTCAGCGTTATGTTCTGATATCCGAAATCCTGGGTATGTTGATTGCCATTCAAATTGTAACAAGTCTACATCTCAAGCATCTTTGTTTTTGTGTTCTGACTCCGCCAATAGAAGAAATGGCATGCTTGGTGGACCACTTTGTGTGAATCCCTCTGGCAGGAGAAACATAGTTGGTCCAACTTCTTATTCTGTGGAGACGAGTGCTTATGATGTGGCTGCTTTAGAATCTCCTTCCCGTGTTGCAGACGAAAAAGTTGGTGTGCTGCTTCTCAATCTAGGAGGACCAGAGACATTGAACGACGTTCAACCTTTTCTGTTTAATCTTTTTGCAGATCCTGATATCATTCGTCTCCCAAGGTTGTTTCAGTTTCTCCAGCGACCATTGGCGAAATTGATTTCTGTACTTCGGGCTCCTAAATCCAAGGAAGGGTATGCTGCTATTGGTGGTGGCTCTCCTTTACGCAAAATTACAGATGACCAGGCACTTGCAATTAAAATGGCTTTGGAAGCAAAGGGCCTCTCTTCAAATGTCTATGTTGGGATGCGGTACTGGTACCCATTCACTGAAGAAGCAGTTCAGCAAATTAAGAGGGACGGAATAACAAGGCTTGTGGTACTACCCCTTTATCCTCAGTTTTCTATATCCACAACTGGGTCAAGCATCCGTGTTATCGAGCATATATTCAGGGAAGATGCTTATTTGTCTAGGCTTCCTGTTTCCATCATAAACTCTTGGTATCAACGCAAAGGTTATATTAAGTCAATGGCTGACTTAATTGAGAAAGAGCTCCAGAGTTTTTCTGAACCAAAAGAGgtAATGATATTTTTCAGTGCCCACGGTGTACCTGTCAGTTACGTTGTGGATGCTGGGGATCCATACCGAGATCAAATGGAGGAGTGCATCTTCTTGATCATGCAAGAGTTGAAAGCTAGAGGAATTAGTAATGAGCACACTCTTGCTTATCAGAGTCGAGTGGGTCCTGTACAGTGGCTGAAACCATATACAGATGAAGTTCTCGTTGAGCTTGGCCAAAAAGGTGTGAGGAGTCTTTTAGCTGTTCCAGTGAGCTTTGTGAGTGAGCATATTGAAACCCTTGAAGAAATTGACATGGAGTACAAGGAATTGGCTCTTGAATCTGGCATCAAGAATTGGGCACGTGTCCCTGCCCTTGGTGTTACCCCTTCCTTCATTACAGATTTGGCAGATGCAGTAATAGAAGCTCTCCCATCAGCAACAGCAATGTGTGCACCGACCAGCACCTCTGAAGATGTTGATAATGGCCctattagatattttataaagatattCTTTGGTTCAATCTTGGCATTCATCTTGTTCTTGTCACCCAAAATGATCATGGCATTCAGGAATCATGTCATTTAG 1443 0.429 MNAASYSALPSTFRSLDRNFSALCSDIRNPGYVDCHSNCNKSTSQASLFLCSDSANRRNGMLGGPLCVNPSGRRNIVGPTSYSVETSAYDVAALESPSRVADEKVGVLLLNLGGPETLNDVQPFLFNLFADPDIIRLPRLFQFLQRPLAKLISVLRAPKSKEGYAAIGGGSPLRKITDDQALAIKMALEAKGLSSNVYVGMRYWYPFTEEAVQQIKRDGITRLVVLPLYPQFSISTTGSSIRVIEHIFREDAYLSRLPVSIINSWYQRKGYIKSMADLIEKELQSFSEPKEVMIFFSAHGVPVSYVVDAGDPYRDQMEECIFLIMQELKARGISNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGVRSLLAVPVSFVSEHIETLEEIDMEYKELALESGIKNWARVPALGVTPSFITDLADAVIEALPSATAMCAPTSTSEDVDNGPIRYFIKIFFGSILAFILFLSPKMIMAFRNHVI 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3646 480 SUPERFAMILY Chelatase 103 436 - -
Ssu1g3646 480 CDD Ferrochelatase_C 275 411 IPR033644 -
Ssu1g3646 480 Gene3D - 266 409 - -
Ssu1g3646 480 Hamap Coproporphyrin III ferrochelatase [cpfC]. 103 428 IPR001015 GO:0004325|GO:0006783
Ssu1g3646 480 Pfam Ferrochelatase 104 427 IPR001015 GO:0004325|GO:0006783
Ssu1g3646 480 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 35 479 - -
Ssu1g3646 480 TIGRFAM hemH: ferrochelatase 102 427 IPR001015 GO:0004325|GO:0006783
Ssu1g3646 480 ProSitePatterns Ferrochelatase signature. 294 313 IPR019772 GO:0004325|GO:0006783
Ssu1g3646 480 Gene3D - 104 428 - -
Ssu1g3646 480 CDD Ferrochelatase_N 105 267 IPR033659 -
Ssu1g3646 480 PANTHER FERROCHELATASE 35 479 IPR001015 GO:0004325|GO:0006783
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3646 Ssu-Chr1 92100100 92102945 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3646 K01772 - gmx:100813423 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3646 1 92100100 92102945 Ssu1g3646 1 92100100 92102945 ECH