Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3645 ATGGCGGAGGAATCACAGTATTCATCGGGAACCGAGTCCACGCCACTCAAGCGCAAGTACGAAGACCAACCCACCGGCTTCTCCGCCGCCCCCGCCACCGGCATCGAGCTCGCGAAGCAGCGTGCTCAAGAAGTCGCCGCTCGCCTCCTCAGCGGCGCTCCTCCTCCTCCCCCCGATGCCAAGCGTCCCAAGCCCGATAACGGTGCTCCTTCCACCGGCTTCGATTCTCTCGATGCGAAGCCTCAGTACTCAGCTCTTCCTCCTGTCTCTTACGGTCACCAAGGCACGAGCAAGAAGATAGAAATCCCTAACGGGAGGGTTGGTGTGATTATTGGAAAAGGTGGAGAGACCATCAAGTATCTCCAGTTGCAGTCTGGGGCCAAAATTCAAGTTACACGTGATATGGATGCTGACCCTAATTCTCCGAATAGGATGGTCGAGCTTATGGGTACTCCTGAAGCAATTGCCTCTGCTGAGAAACTCATCAGTGAAGTTCTTGCTGAGGCTGAATCTGGGGGTTCTGGCATTGTTGCTCGGAGACTGACTGGACAAGCTGGATCGGATGAATTTGTCACGAAAATCCCAAATAATAAGGTTGGCCTTATTATTGGTAAAGGAGGAGAAACGATAAAGAATATGCAAGCTTCGACTGGAGCACGGATTCAGGTGATACCTCTGCATCTTCCCCCGGGTGATACGTCAACTGAAAGAACATTAAAAATTGATGGGGCACCTGACCAAATTGAATCTGCGAAGCAGTTGGTTAATCAAATCATCAGTGGTGAGAATCGTCTTAGAAATCCTGCAATGTCTGGTGGCTATCCTCAGCAAGGTTACCAATCTCGACCACCCTCTAACTGGGCTCCCCCTGCTCCAATGCAGCAACCTGGTTATGGCTATGTGCAACCTGGAGCATACTCTGGTCCAACACCCCAGTATAACATGCCTCAGCCACCATATGCTGGCTATCCTCCCCAGCAACCTGGTGGATATTCCACCAATTGGGACCAGTCTACTGCGCCACCTCACCAGCAGTCTACTCATGCTGGCGGTTATGATTACTATAGTCAACAGCCACATCAACCCCAAAATCCTGGGGGTCCTGCACCTCCAGCCGATGGCTCTGCATACAATTACAGTCAGCCACCTTCCTCTGGTTATAGCCAACCAGGACAGGGTTATGCGCAGGACAGCTATAATGCATATAATGCACAATCACAATCAGGGTATGGGCAGCCCCCGACATATGATCAGCAGCAAGGCTATGGCTCAGCTACTGGCTATGGCAGTGGGAGTAACACAGCACAAGAGGGTCACACTGCGAACTATGCATCCCAGGGAGATTCAACCCAAGCTCCACCTACTCAACCAACTACCATTGCTCAGCATGGTTATCCTACCAACCAGCAGCCCAGCTCAAACACTGCCAACTACCCACCTCAAGGAACTCCTCAACCAGGTTATGGGGTTCCCCCTACATCCCAAGCAGCTTATGGCAGTCAACCACAGCCTGGTTATGGACCTGGTTATGGACCCCCTCAATCTCAAAAGCCGAGTGGCAATCCACCTGTTTATGGACAGTCACAGTCTCCTAGTGCGGGAGGCAGCTATAGTCAGTCGGCATATCCTGCACAGCCCCCATCTTCCGGGTATGCTCAACCAGAATCAGGTGCTCAGAGAGCACCTCCATCTGGTTTTGGTGGTGCAGCGCAACCAGGGTATGGTCCTCAAACATATGTTGCTCCTCAGGGCAGCCAGCCTGGTTATGGTCAGGCACCACCTCCATACAGCAACAGTTCTTATGGTGCTGGTTATACTCAAACTCCGGCATATACTGGTGATGGTAATGCCAGTGGGAATACTCCAGCTCCTCCGAGTGCCGTTGCTAAAGCATCGCCCCAGAGTTGA 1908 0.5225 MAEESQYSSGTESTPLKRKYEDQPTGFSAAPATGIELAKQRAQEVAARLLSGAPPPPPDAKRPKPDNGAPSTGFDSLDAKPQYSALPPVSYGHQGTSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRMVELMGTPEAIASAEKLISEVLAEAESGGSGIVARRLTGQAGSDEFVTKIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGAPDQIESAKQLVNQIISGENRLRNPAMSGGYPQQGYQSRPPSNWAPPAPMQQPGYGYVQPGAYSGPTPQYNMPQPPYAGYPPQQPGGYSTNWDQSTAPPHQQSTHAGGYDYYSQQPHQPQNPGGPAPPADGSAYNYSQPPSSGYSQPGQGYAQDSYNAYNAQSQSGYGQPPTYDQQQGYGSATGYGSGSNTAQEGHTANYASQGDSTQAPPTQPTTIAQHGYPTNQQPSSNTANYPPQGTPQPGYGVPPTSQAAYGSQPQPGYGPGYGPPQSQKPSGNPPVYGQSQSPSAGGSYSQSAYPAQPPSSGYAQPESGAQRAPPSGFGGAAQPGYGPQTYVAPQGSQPGYGQAPPPYSNSSYGAGYTQTPAYTGDGNASGNTPAPPSAVAKASPQS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3645 635 SMART kh_6 94 167 IPR004087 GO:0003676
Ssu1g3645 635 SMART kh_6 186 260 IPR004087 GO:0003676
Ssu1g3645 635 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 46 621 - -
Ssu1g3645 635 MobiDBLite consensus disorder prediction 578 635 - -
Ssu1g3645 635 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 96 173 IPR036612 GO:0003723
Ssu1g3645 635 MobiDBLite consensus disorder prediction 520 555 - -
Ssu1g3645 635 MobiDBLite consensus disorder prediction 1 97 - -
Ssu1g3645 635 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 191 262 IPR036612 GO:0003723
Ssu1g3645 635 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 46 621 - -
Ssu1g3645 635 MobiDBLite consensus disorder prediction 377 501 - -
Ssu1g3645 635 Gene3D K Homology domain, type 1 90 189 IPR036612 GO:0003723
Ssu1g3645 635 ProSiteProfiles Type-1 KH domain profile. 194 255 - -
Ssu1g3645 635 Gene3D K Homology domain, type 1 190 262 IPR036612 GO:0003723
Ssu1g3645 635 CDD KH-I 193 255 - -
Ssu1g3645 635 CDD KH-I 97 162 - -
Ssu1g3645 635 MobiDBLite consensus disorder prediction 327 362 - -
Ssu1g3645 635 MobiDBLite consensus disorder prediction 266 635 - -
Ssu1g3645 635 ProSiteProfiles Type-1 KH domain profile. 95 162 - -
Ssu1g3645 635 Pfam KH domain 98 164 IPR004088 GO:0003723
Ssu1g3645 635 Pfam KH domain 193 256 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3645 Ssu-Chr1 92085945 92091138 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3645 K13210 - gmx:100797476 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3645 1 92085945 92091138 Ssu1g3645 1 92085945 92091138 ECH