Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3644 ATGGCGGATGAAGCACAGTATTCATCAGGAACCGAGTCCGCGCCCGTCAAGCGCAAGTACGAAGACCAATCCACCGACAGACCCACCGGCTTCTCCGCCGCCCCCGCCACTGGCATCGAGCTCGCCAAGCAGCGTGCTCAAGAAGTCGCCGCTCGCCTCCTAAGCGGCGCTCCTCCTCCTCCCCTCGACGCCAAGCGTCCCAAGCCCGATAACGGTGCTCCTTCCACCGGCTTCGATTCTCTCGATGCGAAGCCTCAGTACTCAGCAGTTCCTCCCGTATCTTACGCTCATCAAGGTGCGAGCAAGAAGATAGATATCCCTAACGGTAGGGTTGGTGTGATTATTGGTAAAGGAGGAGAGACCATTAAGTATCTCCAGTTGCAGTCTGGGGCCAAAATTCAAGTTACACGAGATATGGACGCTGACCCTAATTCTCTGAATAGGATGGTCGAGCTTATGGGTACTCCTGAAGCAATTGCCTCTGCTGAGAAACTCATCAGTGAAGTTCTTGCTGAGGCTGAATCTGGGGGTTCTGGCATTGTTGCTCGGAGACTGACTGGACAAGCTGGATCGGATGAATTTGTCATGCAAATCCCTAATAATAAGGTTGGCCTTATAATTGGTAAAGGAGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCACGGATTCAGgTGATACCTCTGCATCTTCCCCCTGGTGACCCATCAACTGAAAGAACATTAAAAATTGATGGGACTCCTGAGCAAATTGAGTCTGCAAAACAGTTGGTTAATCAAGTCATCAGTGGTGAGAATCGTCTTAGAAATCCTGCAATGTCTGGTGGCTATCCTCAGCAAGGTTACCAATCTCGACCACCCTCTAACTGGGCTCCCCCTGCTCCAATGCAGCAACCTGGTTATGGCTATGTGCAACCTGGAGCATACTCTGGTCCAACACCCCAGTATAACATGCCTCAGCCACCATATGCTGGCTATCCTCCCCAGCAACCTGGTGGATACTCCACCAATTGGGACCAGTCTACTGCGCCACCTCACCAGCAGTCTACTCATGCTGGCGGTTATGATTACTATAGTCAACAGCCACATCAACCCCAAAATCCTGGGGGTCCTGCACCTCCAGCTGATGGCTCTGCATACAATTACAGTCAGCCACCTTCCTCTGGTTATAGCCAACCAGGACAGGGTTATGCGCAGGACAGCTATAATGCATATAATGCACAATCACAATCAGGGTATGGGCAGCCCCCGACATATGATCAGCAGCAAGGCTATGGCTCAGCTACTGGCTATGGTAGTGGGAGTAACACAGCACAAGAGGGCCAGACTGCGAACTATGCATCACAGGGAGATTCAGCCCAAGCTCCACCTGCTCAACCAACTACCAATGTGCAGCAAGGTTTTCCTACCAGCTCGAACACTGCCAACTACCCACCTCAAGGAACTCCTCAGCCAGGTTATGGGGTTCCCCCTACATCCCAAGCAGCTTATGGCAGTCAACCACAGCCTGGTTATGGACCCCCTCACTCTCAAAAGCCGAGTGGCAATCCCCCTGTTTATGGACAGTCACAGTCTCCTAGTGCGGGAGGGGGCTATGGTCAGTCAGCATATCCTGCACAGCCCCCACCTTCCGGGTATGCTCAACCAGAATCAGGTGCTCAGAGAGCACCACCATCTGGTTATGGTGGTGCAGTGCAACCTGGGTATGGTCCTCAAACATATGGTGCTCCACAGGGTGGCCAGCCTGGTTATGGTCAGGCACCGCCCCCATACAGCAACAGTTATGGTGCTGGTTATACTCAAACTCCGGCATATACTGGTGATGGTAATGCCAGTGGGAATACTCAGGCTCCTCAGAGTGCCGTTGCTAAAGCATCGCCTCAGAGTTGA 1893 0.5219 MADEAQYSSGTESAPVKRKYEDQSTDRPTGFSAAPATGIELAKQRAQEVAARLLSGAPPPPLDAKRPKPDNGAPSTGFDSLDAKPQYSAVPPVSYAHQGASKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSLNRMVELMGTPEAIASAEKLISEVLAEAESGGSGIVARRLTGQAGSDEFVMQIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDPSTERTLKIDGTPEQIESAKQLVNQVISGENRLRNPAMSGGYPQQGYQSRPPSNWAPPAPMQQPGYGYVQPGAYSGPTPQYNMPQPPYAGYPPQQPGGYSTNWDQSTAPPHQQSTHAGGYDYYSQQPHQPQNPGGPAPPADGSAYNYSQPPSSGYSQPGQGYAQDSYNAYNAQSQSGYGQPPTYDQQQGYGSATGYGSGSNTAQEGQTANYASQGDSAQAPPAQPTTNVQQGFPTSSNTANYPPQGTPQPGYGVPPTSQAAYGSQPQPGYGPPHSQKPSGNPPVYGQSQSPSAGGGYGQSAYPAQPPPSGYAQPESGAQRAPPSGYGGAVQPGYGPQTYGAPQGGQPGYGQAPPPYSNSYGAGYTQTPAYTGDGNASGNTQAPQSAVAKASPQS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3644 630 ProSiteProfiles Type-1 KH domain profile. 191 259 - -
Ssu1g3644 630 Gene3D K Homology domain, type 1 94 186 IPR036612 GO:0003723
Ssu1g3644 630 Gene3D K Homology domain, type 1 187 289 IPR036612 GO:0003723
Ssu1g3644 630 SMART kh_6 190 264 IPR004087 GO:0003676
Ssu1g3644 630 SMART kh_6 98 171 IPR004087 GO:0003676
Ssu1g3644 630 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 194 266 IPR036612 GO:0003723
Ssu1g3644 630 CDD KH-I 193 259 - -
Ssu1g3644 630 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 102 177 IPR036612 GO:0003723
Ssu1g3644 630 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 49 617 - -
Ssu1g3644 630 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 49 617 - -
Ssu1g3644 630 MobiDBLite consensus disorder prediction 381 501 - -
Ssu1g3644 630 MobiDBLite consensus disorder prediction 516 532 - -
Ssu1g3644 630 MobiDBLite consensus disorder prediction 594 630 - -
Ssu1g3644 630 CDD KH-I 101 166 - -
Ssu1g3644 630 MobiDBLite consensus disorder prediction 331 366 - -
Ssu1g3644 630 MobiDBLite consensus disorder prediction 269 630 - -
Ssu1g3644 630 MobiDBLite consensus disorder prediction 1 86 - -
Ssu1g3644 630 ProSiteProfiles Type-1 KH domain profile. 99 166 - -
Ssu1g3644 630 Pfam KH domain 195 260 IPR004088 GO:0003723
Ssu1g3644 630 Pfam KH domain 103 168 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3644 Ssu-Chr1 92078733 92083854 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3644 K13210 - gmx:100797476 847.425