Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3643 ATGGCTCTTCTGAGTCGAGCTTCCTCACGCTTCCCTCAACTGGTCTGCCCTCAACGGGTAGTTTCCCTCCACACAACGCTCCCATCTCTGAACGCATCCACACCCACGCCCGCCCCATATGCTCCGCCACCGCCCCCATCCGCTTCCTCCCCCGCCGGCGTGTCCAAGGCGGCGGAGTTCGTGATCTCCAAGGTGGACGATCTGATGAACTGGGCCCGCCGCGGGTCCATCTGGCCCATGACCTTCGGCCTCGCCTGCTGCGCCGTCGAAATGATGCACACCGGCGCGGCCCGCTACGATCTCGATCGCTTCGGCATCATTTTCAGGCCCAGCCCACGCCAGTCTGATTGCATGATTGTCGCTGGCACTCTCACTAACAAGATGGCCCCTGCTCTTCGCAAGGTTTATGACCAAATGCCTGAGCCTAGATGGGTCATCTCAATGGGAAGTTGTGCTAATGGAGGAGGATACTATCATTACTCTTACTCTGTTGTTCGGGGATGTGACAGGATTGTTCCTGTTGACATATACATTCCAGGCTGTCCTCCAACTGCCGAGGCTTTGCTGTATGGACTCCTCCAGCTGCAGAAAAAGATCAATAGGCGCAAAGACTTCCTCCATTGGTGGACAAAGTGA 636 0.5676 MALLSRASSRFPQLVCPQRVVSLHTTLPSLNASTPTPAPYAPPPPPSASSPAGVSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3643 211 SUPERFAMILY HydA/Nqo6-like 59 203 - -
Ssu1g3643 211 PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL 1 211 - -
Ssu1g3643 211 MobiDBLite consensus disorder prediction 33 52 - -
Ssu1g3643 211 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 86 195 IPR006137 GO:0051536
Ssu1g3643 211 MobiDBLite consensus disorder prediction 35 50 - -
Ssu1g3643 211 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 167 183 IPR006138 GO:0008137|GO:0048038|GO:0051539
Ssu1g3643 211 PANTHER NADH DEHYDROGENASE 1 211 - -
Ssu1g3643 211 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 60 201 IPR006138 GO:0008137|GO:0048038|GO:0051539
Ssu1g3643 211 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 52 200 IPR006138 GO:0008137|GO:0048038|GO:0051539
Ssu1g3643 211 Gene3D - 57 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3643 Ssu-Chr1 92071622 92074400 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3643 K03940 - gmx:100802267 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3643 1 92071622 92074400 Ssu1g3643 1 92071622 92074400 ECH