Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3631 atgtccGACCCATCCTCCAAACCCAACGGAAACGGCGCAATTAACGGCGCGGCCGCCACTAACGGCAATCCCGGCGGTCCCGTTAAGTCCCAACTGTATAACCCGAACCGCCAGGTTTACCGGCCGCAATCGCGCTACCACCGCCGCCAGCGGTCCCACCGCAACCTCTGCTGCTGCTTCTGCTTCTGGACCATCCTCACCGTCCTCGCGGTGGCGCTCCTGGCCGCCATCGTGGGCGCCGCACTGTACGTACTGTACCGCCCTCACCGGCCCGAATTCTCCGTCACGAACCTCCGCATTGCGAGGATGAACCTCACCACTTCGTCGGACTCCCCCTCGCACCTCACCGCGCTGTTCAACCTCACCCTCATCGCGAAGAACCCCAACAACCACCTCGTGTTCTTCTACGACCCCTTCGCCGTCACGGTGTTCTCGAACTCCGTCCCCGTCGGAAACGGCTCCGTCACGGCGTTCACCTCCGACAAGAACAACCAGACGAGCCTCCGCGCTGTGCTGGCGGGGTCGCAAGATCTGGACACGGACTCGTTGACCAGCCTGAGATCGGGTCTCAAGAGCCAAAAGGGCTTCCCCGTTGAGATTCAGATGGACACGAAggtgaagatgaagatggaTTCGCTCAAGAGTAAGAAAGTGGGGATTAGGGTCACGTGCGACGGAATCAGAGGGACCGTTCCCGCCGGCAAGTCTCCGGCGGTGGCCTCCGTCGTCGACTCCGACTGTAAGGTGGATCTTCGAATCAAGATCTGGAAGTTctccttttaa 783 0.5875 MSDPSSKPNGNGAINGAAATNGNPGGPVKSQLYNPNRQVYRPQSRYHRRQRSHRNLCCCFCFWTILTVLAVALLAAIVGAALYVLYRPHRPEFSVTNLRIARMNLTTSSDSPSHLTALFNLTLIAKNPNNHLVFFYDPFAVTVFSNSVPVGNGSVTAFTSDKNNQTSLRAVLAGSQDLDTDSLTSLRSGLKSQKGFPVEIQMDTKVKMKMDSLKSKKVGIRVTCDGIRGTVPAGKSPAVASVVDSDCKVDLRIKIWKFSF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3631 260 Pfam Late embryogenesis abundant protein 125 224 IPR004864 -
Ssu1g3631 260 Gene3D - 84 223 - -
Ssu1g3631 260 MobiDBLite consensus disorder prediction 1 34 - -
Ssu1g3631 260 SUPERFAMILY LEA14-like 73 207 - -
Ssu1g3631 260 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 6 259 - -
Ssu1g3631 260 PANTHER HARPIN-INDUCED PROTEIN 6 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3631 Ssu-Chr1 91909737 91910519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3631 35 253 EF-hand Containing Proteins AT5G21130 29.694 8.40e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3631 - - gmx:100786652 437.958