Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3624 ATGGATTCTTCACAAGGGTCTACCATTGCTGGTTTCGTGGACAATGCATCATCCATTCAGAGGAACGAATCTAGTTTTGATGGCGTTCCTGTGTATGTCAAGGAGCTAGTTGCTGGAGGCTTTGCTGGTGCGCTTTCTAAGACTACTGTTGCACCCCTCGAACGGGTCAAGATACTCTGGCAGACAAGGACAGCAGGATTTCAGGGTCTTGGGGTGTATCAATCTTTGAATAAGTTGCTAAAGCATGAAGGTTTTCGAGGATTATATAAAGGAAATGGAGCTAGTGTTATCCGCATTGTTCCATATGCAGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATATTGAATGATTATCCTATGTTAGGATCAGGTCCTTTTATTGATCTTTTAGCAGGCTCTGCTGCAGGAGGAACTTCAGTTTTATGTACCTACCCCTTGGATCTTGCTCGTACCAAACTTGCTTACCAGgtggTGGATACAAGAGAAAGTATCAAAGATGGTATGAGAGGAGTTCAATCTCAATCTGCACATAATGGCATTAAAGGTGTACTTACAAGTGTCTATAAGGAAGGGGGAGTTCGAGGACTTTATCGGGGTGCAGgACCAACCCTTACTGGAATTCTTCCATATGCTGGTTTAAAGTTCTACATGTATGAGAAATTGAAGACACATGTCCCTGAAGAACATCAAAAATCCATTTTGATGCGTCTTTCTTGTGGAGCTCTAGCTGGACTGTTTGGGCAGACTTTAACATACCCTTTAGATGTTGTTAAGAGACAGATGCAGGTTGGCAGCCTGCAAAATGCCGCTCATGAAGATGCCAGATACAAAAATACATTTGACGGACTTAGGATGATTGTTCGTAATCAAGGATGGAGGCAGCTGTTTGCTGGCGTAAGCATTAACTATATAAGGATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGACTTGGCTTGGCATACCACCTCAACAAAAGTCTCGATCAGTTTCGGCAGCGTGA 1026 0.4259 MDSSQGSTIAGFVDNASSIQRNESSFDGVPVYVKELVAGGFAGALSKTTVAPLERVKILWQTRTAGFQGLGVYQSLNKLLKHEGFRGLYKGNGASVIRIVPYAALHFMTYERYKSWILNDYPMLGSGPFIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVVDTRESIKDGMRGVQSQSAHNGIKGVLTSVYKEGGVRGLYRGAGPTLTGILPYAGLKFYMYEKLKTHVPEEHQKSILMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNAAHEDARYKNTFDGLRMIVRNQGWRQLFAGVSINYIRIVPSAAISFTTYDMMKTWLGIPPQQKSRSVSAA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3624 341 Pfam Mitochondrial carrier protein 128 229 IPR018108 -
Ssu1g3624 341 Pfam Mitochondrial carrier protein 234 327 IPR018108 -
Ssu1g3624 341 Pfam Mitochondrial carrier protein 32 119 IPR018108 -
Ssu1g3624 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 116 IPR018108 -
Ssu1g3624 341 PANTHER SOLUTE CARRIER FAMILY 25 18 335 - -
Ssu1g3624 341 SUPERFAMILY Mitochondrial carrier 33 322 IPR023395 -
Ssu1g3624 341 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Ssu1g3624 341 PRINTS Mitochondrial carrier protein signature 91 111 IPR002067 GO:0055085
Ssu1g3624 341 PRINTS Mitochondrial carrier protein signature 243 265 IPR002067 GO:0055085
Ssu1g3624 341 PRINTS Mitochondrial carrier protein signature 141 159 IPR002067 GO:0055085
Ssu1g3624 341 PRINTS Mitochondrial carrier protein signature 200 218 IPR002067 GO:0055085
Ssu1g3624 341 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Ssu1g3624 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 227 IPR018108 -
Ssu1g3624 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 234 326 IPR018108 -
Ssu1g3624 341 PANTHER GRAVES DISEASE MITOCHONDRIAL SOLUTE CARRIER PROTEIN-LIKE 18 335 - -
Ssu1g3624 341 Gene3D Mitochondrial carrier domain 30 328 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3624 Ssu-Chr1 91752757 91756856 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3624 108 336 Organic Solute Cotransporters AT1G14560 69.264 9.53e-117 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3624 - - gmx:100800243 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3624 1 91752757 91756856 Ssu1g3624 1 91752757 91756856 ECH