Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3611 ATGGCGGATCCCTACTACTCATACGGTACTTCCGCAGCCGCTGACGGAGCATGCATTGGGAGAACCAGCTTTGCTGGTTATATTCCATCTGAGCCTTCAAATTCCACTGAATTGCGGGGCATTGGATCTGATTACCTGCAGAGAGATATTGGCTTGTTTTACAGTGTTGATGATACCTTGGGCTCCAGAGTTCATTCTGCGCCTGTTAAGGGTTATTCACCTCTTGAAGATCCTGATCTGAGTAAAAAACGAGATACGCCGTTGGACACTAATCATGGTGTTTCTGATGTAAACAGCGAAAGACCAATCTCTAAAAGCAGTTATGATGGTCTCCCAACTTCAGCAGCAGACTCAAACATTCTGTTTGTGGGTGGACTCCCAAATGACTGCACTAGAAGGGAAGTTGGGCATCTTTTCCGTCCCTTTATTGGCTATAAGGATATCAGAGTTGTTCACAAGGAGCCTAGACGTAGTGGAGACAAGGCTATGACTTTGTGTTTTGTGGAGTTTATTGACTCCAAATGTGCTCTCACTGCCATGGAAGCCCTgcaaggtaatatatatatatatattttctggATTGTATATAATTGA 594 0.4259 MADPYYSYGTSAAADGACIGRTSFAGYIPSEPSNSTELRGIGSDYLQRDIGLFYSVDDTLGSRVHSAPVKGYSPLEDPDLSKKRDTPLDTNHGVSDVNSERPISKSSYDGLPTSAADSNILFVGGLPNDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFIDSKCALTAMEALQGNIYIYIFWIVYN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3611 197 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 7 186 - -
Ssu1g3611 197 PANTHER PROTEIN COUCH POTATO 7 186 - -
Ssu1g3611 197 Gene3D - 114 188 IPR012677 -
Ssu1g3611 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Ssu1g3611 197 MobiDBLite consensus disorder prediction 67 108 - -
Ssu1g3611 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 186 IPR000504 GO:0003723
Ssu1g3611 197 MobiDBLite consensus disorder prediction 91 108 - -
Ssu1g3611 197 SMART rrm1_1 120 192 IPR000504 GO:0003723
Ssu1g3611 197 SUPERFAMILY RNA-binding domain, RBD 74 186 IPR035979 GO:0003676
Ssu1g3611 197 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3611 Ssu-Chr1 91521607 91523606 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3611 - - gmx:100809186 333.183