Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3608 AtgaagaagacaaagaagagtgGCGAAGAAAGTGGGGGGAGGTTGAGGGGTGCGGAGAGGTCAGCGTACTTCGCACGCCGAGAGGCAGCGAAGGTGTTGAGAGTGGTTCTCGAAGGAGACGCTAAGCGCCGCGCCCTTGCCTCCATCAAATCTCTCATCTATCAACCTTCCGTTAGAAACAAGAAGGCCACCTTCGCTCTCATTTGTCAAACCCTCAAAcATCTTCCCATCATCAAGGATGTCTTGGAAGCTGCTTCTATTCTCAACACCAAGTGGAAGAGACAACGAGAATTGATTTATATCATTGTCTATGATATCCTTTTCGGCCAGGCGGTTTCGCCAGTTGGTGATGCAGAGAAGTACCTTGTGCGCCACCAAGATGCCTTGCGTTCAACTCTGAAACAGCTTTTGTTACAGAGAAATGTGAAGACAGTTAAACAGTTGATTGCTCAGCATGAAGTTCCTGATGTTTCTGTACCTCGATATGTTCGTGTGAATACACTTAAACTGGATGTTGATTCTGCCTTACTTGAACTTCAGAAAAAATACTCGGTTCAAAAGGATAATTTACTGCCTGAATTGCTGATACTCCCACCAGGCACTGATTTACATGATCATCCTCTTGTCAAGAATGGCAGTATCTTTATGCAAGGTAAGGCAAGTTCCATGGTAGCACCAGCCCTTAGCCCTCAACCAGGATGGGAGGTTCTGGACGCATGTGCTGCACCGGGAAACAAAACTGTTCACCTTGCTGCCCTTATGAAGAGAAAGGGTGAGATTATAGCATGTGAGCTGCAAAAAGAAAGGATTAAGCGTTTGAAAGACACTATAAAGCTATCTGGTGCTTGTAACATACAAGTCCTCAATGAGGATTTCTTGAACATAAATCCCAAGGATCCTCCGTATTCTAAGGTGAAAGCTATTCTCTTGGATCCTTCCTGCTCTGGTTCTGGTACTGCTGCTTCAAGACTAGACCATCTGCTCCCATCTAAAGTCAGCAGGTCAGGATACTGA 1014 0.4467 MKKTKKSGEESGGRLRGAERSAYFARREAAKVLRVVLEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLKHLPIIKDVLEAASILNTKWKRQRELIYIIVYDILFGQAVSPVGDAEKYLVRHQDALRSTLKQLLLQRNVKTVKQLIAQHEVPDVSVPRYVRVNTLKLDVDSALLELQKKYSVQKDNLLPELLILPPGTDLHDHPLVKNGSIFMQGKASSMVAPALSPQPGWEVLDACAAPGNKTVHLAALMKRKGEIIACELQKERIKRLKDTIKLSGACNIQVLNEDFLNINPKDPPYSKVKAILLDPSCSGSGTAASRLDHLLPSKVSRSGY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3608 337 PRINTS RNA (C5-cytosine) methyltransferase signature 208 222 IPR023267 GO:0001510
Ssu1g3608 337 PRINTS RNA (C5-cytosine) methyltransferase signature 237 247 IPR023267 GO:0001510
Ssu1g3608 337 PRINTS RNA (C5-cytosine) methyltransferase signature 306 318 IPR023267 GO:0001510
Ssu1g3608 337 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 16 333 IPR023267 GO:0001510
Ssu1g3608 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 160 325 IPR029063 -
Ssu1g3608 337 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 151 337 IPR001678 GO:0008168
Ssu1g3608 337 Gene3D Vaccinia Virus protein VP39 125 335 IPR029063 -
Ssu1g3608 337 PANTHER BNAA09G04380D PROTEIN 16 333 - -
Ssu1g3608 337 Pfam 16S rRNA methyltransferase RsmB/F 227 320 IPR001678 GO:0008168
Ssu1g3608 337 CDD AdoMet_MTases 236 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3608 Ssu-Chr1 91471214 91475588 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3608 K15264 - gmx:100775620 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3608 1 91471214 91475588 Ssu1g3608 1 91471214 91475588 ECH