Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3601 ATGCCAATGGCTCAGCCATTCCGGAAAGCCATAGCGAAACCTTGTTCTTCTTCATCCACACCTCCAATCCCAAACCGCTCCCTCGTAACCTCCATTACCTCAATCCTTCAAAACCTGAATCCCCAAAGTCCAGATTGCTCACCCCTCCTTAAAGAGTTCTCACCTCACCTCACCCCAAACTTGGTTATCCACGTGATCAAGAATCTAAAGAACCCCCACAACGCCCTTCACTTCTTCAACTGGGCCTCCAATCCCAACCCCAACCCCAACAACTACTCCCACACTCCCTCCTGCTACGCCGCCATCACTGACCTCTTGCTCTCTCACTCCCTCTTCTCCACCGCCTACTCCCTCCTTCGCCACTCTAACAAACTCTCCGACTTCCTCATCTGCAGATTCATCAACGCTCTGGGCCACCGTGGCGACATCAGGGGCGCCATTCACTGGTTCCACAAAGCCAAAACCTTCGGAAGAGGACGCTGCGTGTTCTCCTGCAACGCCATATTGGGCGTGCTCGTGAGGGCCAACCGCGTCAATATAGCCAAGGCCGTCTACGATCAGGTTCTCGCAGAAGGTTTGGTGGAACCCGATGTTTACACTCACACCACCATGATTCGTGGGCTCTGCAAAGTGGGCATGGTCGAGAGTGCGCGCAAGGTGTTCGACGAAATGCGCTGCGAACCCAACATGGTTACTTACAACACATTGATCCACGGGTTTTGCAAGAAGGGTGACATGGAGGGTGCCAAGACGGTTTTTACCCGACTGGTGGAGAGTAAGAGTTGCAAGCCTGATGTGGTGAGTTTCACCACTTTGATTGATGGGTATTCGAAGAAAGGTGAATTGCGAGAGGCGCTGGAGTGCTTCAAGGAGATGGTGGAACGAGGGTGTTCCCCGAATGTTGTGACTTACAATGCGTTGATTGAAGGTCTTTGTTTGAGCGGAGAAGTGGATGAGGCCAAGAAGATGATGACGAGAATGCGGTTGAATGGTTTAAAAGACAATGTCGCCACAAACACTAGCATGTTGAAAGGGTTTTGCATTGTGGGAATGTCTGATGAGGCTGTTAGGCATCTGAGGGAAATGGTTAGTCGCGGGATGAAGCCAGATTTGAAAGCTTACAGTGTCGTTGTCAATGAGTATTGCAAGATTGGAAAACCAGGCGAAGCAGTTTCACTTCTGAGGGAAATGGTGGCCAGGGGCATCAAGCCAAGTGTGTCAAGTTTCAATGCGGTGTTTAGAGTTCTTGTGGATGAGGGGAAGCTTGAAGAAGGGGTTTTTCTTTTGAAGCAGATGCCTCGGATGGGATGCTCGCCCAACTTCTTGTCTTATTGCATAGTGATATGTGGTCTTTGTAAAGTGAAGGGTAGGATGCAGCAAGTTGAAAAGCTTGTTTCGGACATGCTTCAGAATGGACATAACCTGGATGCCACTATGTACAACTGCTTGCTTGGGGGATATTGTGATGACGAGGATGAAGAAATGGCACTAAAGACGGTTTATGACATTATGGACAAGAACTTTGTAATCAACCAAGACACTTTCTGCAGTTTTGTTAAGGTGTTGTGTGCCAAGGGAAAATTGAAAGAGGCGGAGACAGTATTTGAGGAGATGTGCAGGAGATGCCAGTTCAGTGGGAAAGCTAAGGTAAAGGAGGaacattaa 1665 0.4901 MPMAQPFRKAIAKPCSSSSTPPIPNRSLVTSITSILQNLNPQSPDCSPLLKEFSPHLTPNLVIHVIKNLKNPHNALHFFNWASNPNPNPNNYSHTPSCYAAITDLLLSHSLFSTAYSLLRHSNKLSDFLICRFINALGHRGDIRGAIHWFHKAKTFGRGRCVFSCNAILGVLVRANRVNIAKAVYDQVLAEGLVEPDVYTHTTMIRGLCKVGMVESARKVFDEMRCEPNMVTYNTLIHGFCKKGDMEGAKTVFTRLVESKSCKPDVVSFTTLIDGYSKKGELREALECFKEMVERGCSPNVVTYNALIEGLCLSGEVDEAKKMMTRMRLNGLKDNVATNTSMLKGFCIVGMSDEAVRHLREMVSRGMKPDLKAYSVVVNEYCKIGKPGEAVSLLREMVARGIKPSVSSFNAVFRVLVDEGKLEEGVFLLKQMPRMGCSPNFLSYCIVICGLCKVKGRMQQVEKLVSDMLQNGHNLDATMYNCLLGGYCDDEDEEMALKTVYDIMDKNFVINQDTFCSFVKVLCAKGKLKEAETVFEEMCRRCQFSGKAKVKEEH 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3601 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Ssu1g3601 554 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 26 545 - -
Ssu1g3601 554 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 26 545 - -
Ssu1g3601 554 Gene3D Tetratricopeptide repeat domain 399 470 IPR011990 GO:0005515
Ssu1g3601 554 Gene3D Tetratricopeptide repeat domain 327 398 IPR011990 GO:0005515
Ssu1g3601 554 Gene3D Tetratricopeptide repeat domain 471 541 IPR011990 GO:0005515
Ssu1g3601 554 Gene3D Tetratricopeptide repeat domain 31 221 IPR011990 GO:0005515
Ssu1g3601 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 475 IPR002885 -
Ssu1g3601 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Ssu1g3601 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 264 IPR002885 -
Ssu1g3601 554 SUPERFAMILY TPR-like 230 400 IPR011990 GO:0005515
Ssu1g3601 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Ssu1g3601 554 MobiDBLite consensus disorder prediction 1 24 - -
Ssu1g3601 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Ssu1g3601 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 227 IPR002885 -
Ssu1g3601 554 TIGRFAM PPR: pentatricopeptide repeat domain 340 370 IPR002885 -
Ssu1g3601 554 TIGRFAM PPR: pentatricopeptide repeat domain 231 266 IPR002885 -
Ssu1g3601 554 TIGRFAM PPR: pentatricopeptide repeat domain 267 301 IPR002885 -
Ssu1g3601 554 TIGRFAM PPR: pentatricopeptide repeat domain 408 440 IPR002885 -
Ssu1g3601 554 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Ssu1g3601 554 TIGRFAM PPR: pentatricopeptide repeat domain 199 227 IPR002885 -
Ssu1g3601 554 TIGRFAM PPR: pentatricopeptide repeat domain 514 541 IPR002885 -
Ssu1g3601 554 TIGRFAM PPR: pentatricopeptide repeat domain 302 332 IPR002885 -
Ssu1g3601 554 Pfam PPR repeat family 404 453 IPR002885 -
Ssu1g3601 554 Pfam PPR repeat family 264 312 IPR002885 -
Ssu1g3601 554 Pfam PPR repeat family 335 383 IPR002885 -
Ssu1g3601 554 Pfam PPR repeat 514 541 IPR002885 -
Ssu1g3601 554 Pfam PPR repeat 479 507 IPR002885 -
Ssu1g3601 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Ssu1g3601 554 Gene3D Tetratricopeptide repeat domain 222 326 IPR011990 GO:0005515
Ssu1g3601 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 541 IPR002885 -
Ssu1g3601 554 Pfam PPR repeat 194 225 IPR002885 -
Ssu1g3601 554 Pfam PPR repeat 226 254 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3601 14 541 Glycosyltransferase AT1G05670 25.637 2.04e-54 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3601 - - gmx:100802054 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3601 1 91419168 91420832 Ssu1g3601 1 91419168 91420832 ECH