Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3598 ATGGCCACCGCATCCTTCAACTCCGAACAAGCCCGCGCCCCACCCGCCATTCCCATGCCCCCTCCCTGTCTCACCAAGTTCAAAATTGGCCTCTGTCAACTCTCCGTCACTCCCGACAAGGACAGGAACATCGCCCACGCGCGCACCGCAGTTCAGGACGCTGCATCAAAGGGCGCTCAGCTTGTTCTTTTGCCTGTgagttcctttttcttttttttttccccctctttttgCTTTATAGGATCGATCACGCCTCTTGGCATAGTGAGTGTGTCCTTGTCTCGTCAGGAAATTTGGAACAGTCCTTATTCGAATGACAGTTTCCCCGTCTATGCTGAGGACATCGACGCCGATGCTTCTCCTTCCACCGCCATGCTCTCTGAACTCTCTCGTCTCTTGAAAATCACCATCGTTGGTGGCTCCATTCCAGAACGTTCTGGAGGTCGCTTGTACAACACTTGCTGCGTCTTTGGCACCGATGGGAAGCTACTAGCCAAGCATCGCAAGATACATCTTTTTGATATTGACATTCCTGGGAAGATTACCTTTATTGAGTCAAAAACTCTTACTGCTGGGGAGACGCCGACGATTGTGGACACAGAGGTTGGACGCATTGGCATGGGCATCTGTTATGACATTCGGTTTCCGGAACTAGCAATGATATATGCTGCTAGAGGTGCTCACTTACTCTGCTATCCTGGGGCATTTAACATGACAACTGGACCATTACATTGGGAGTTATTGCAGAGGGCAAGGGCTACAGATAATCAGTTATACGTGGCTACCTGTTCACCTGCCCGGGATACTGGATCTGGTTATGTGGCTTGGGGCCACTCCACTCTTGTTGGACCATTTGGAGAAGTTCTGGCTACTACAGAACATGAAGAGGCAATCATCATAGCTGAAATTGATTATTCAATATTGGAGCAGAGAAGGACAAGTCTCCCTGTAACTAAGCAAAGACGAGGTGATCTTTACCAGTTGGTGGATTTTCAGAGGCTGACGTCCCAGTGA 1014 0.4813 MATASFNSEQARAPPAIPMPPPCLTKFKIGLCQLSVTPDKDRNIAHARTAVQDAASKGAQLVLLPVSSFFFFFSPSFCFIGSITPLGIVSVSLSRQEIWNSPYSNDSFPVYAEDIDADASPSTAMLSELSRLLKITIVGGSIPERSGGRLYNTCCVFGTDGKLLAKHRKIHLFDIDIPGKITFIESKTLTAGETPTIVDTEVGRIGMGICYDIRFPELAMIYAARGAHLLCYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDTGSGYVAWGHSTLVGPFGEVLATTEHEEAIIIAEIDYSILEQRRTSLPVTKQRRGDLYQLVDFQRLTSQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3598 337 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 27 305 IPR003010 GO:0006807
Ssu1g3598 337 PANTHER OMEGA-AMIDASE, CHLOROPLASTIC-LIKE 5 65 - -
Ssu1g3598 337 PANTHER OMEGA-AMIDASE, CHLOROPLASTIC-LIKE 96 336 - -
Ssu1g3598 337 SUPERFAMILY Carbon-nitrogen hydrolase 25 321 IPR036526 -
Ssu1g3598 337 Pfam Carbon-nitrogen hydrolase 29 308 IPR003010 GO:0006807
Ssu1g3598 337 PANTHER NITRILASE-RELATED 5 65 - -
Ssu1g3598 337 PANTHER NITRILASE-RELATED 96 336 - -
Ssu1g3598 337 ProSitePatterns Uncharacterized protein family UPF0012 signature. 206 226 IPR001110 -
Ssu1g3598 337 Gene3D - 24 331 IPR036526 -
Ssu1g3598 337 CDD nit 28 322 IPR045254 GO:0016811
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3598 Ssu-Chr1 91400680 91406867 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3598 K13566 - gmx:100817195 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3598 1 91400680 91406867 Ssu1g3598 1 91400680 91406867 ECH