Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3587 ATGGAGAGGGTTTCGTGGAACTGGCGTCGTTCCGACGGAGAGAGTAGTTCCGGTTCTGCCGTTGCCGCCGAGGACACTCACCGCAAGCGCGCCAAAGTTTACGATGATTTCGATGACTTTCATTGTGCAATTGTGAAATCTTCGCATACTGGGAAATCCAGTGCATCTGCTGAATGCGGGGATTGTGGTGATGATTTTCAAGGATCGTCCTTTCGATCCAACGATGATGCTTTTAGGTTGATGTCTGTTGGTGAGGAGAGTGACTTTGATGAAGGAGATGACGGTGACATCTCAAAAGTAGATGATCTAGAGGTCAAGATGGATCTTACGGATGATTTATTGCACATGGTTTTCTCGTTTTTGGATCATCCCAGTCTCTGCAAGGCTGCCAGGGTTTGTAAGCAGTGGCGAGCTGCTAGTGCTCATGAAGACTTCTGGAagagtttgaattttgaagatcgGAACATACCTGTAGAGCAATTTGAGGATATCTGTAGGCGTTATCCTAATGTCACAGCAATCCGCATGTCTGGTCCTGCCACTGCCAGCAACCAGCTTGTCATGACGGCCATCTCTTCGTTAAGAAGTCTTGAGGCTTTAACATTGGGAAGAGGAAATATAATGGATAATTTTTTCCATGCTTTGGCCAATTGTTCTATGTTGAAAAGACTGAGCATCAATGATGCTGTACTTGGCAATGGTATTCATGAGATATCACTTAATCATGATAGGTTGTGTCATCTCCAGTTGACAAAATGCCGTGTGATGCGTATAGCAGTAAGGTGTCCACAACTTGAAACTATGTCATTGAAGCGCAGTAACATGGCACAGACTGTGCTCAATTGCCCCCTTTTGCAAGAGCTTGATATAGGCTCTTGCCACAAACTTCCTGATTCTGCTATTCGTTCAGCTGTTACATCATGCCCGCAATTAGTTTCTTTGGATATGTCTAATTGTTCATGTGTCAGTGATGAAACATTACGGGAAATATCCCTGAATTGTGCTAACCTTAGTTTTCTTGATGCATCGTACTGCCCGAACGTATCCTTGGAGACTGTTAGACTGCCAATGTTAACAGTTCTGAAGCTTCACAGTTGTGAGGGCATCACTTCAGCCTCAATGGCTGCAATATCTCATAGTTATATGTTGGAGGTTTTGGAGCTTAATAATTGCAGCCTATTGACGTCAGTGTCTTTGGATCTTCCCCGCTTGCAGAATATTAGATTGGTACATTGTCGCAAATTTGCTGATTTGAACTTGATGACCCTAATGCTTTCTTCTATTTGGGTGTCCAATTGCCCTGTGCTCCACCGCATCAACATCACTTCAAATTCACTTCAAAAATTAACAATACCAAAGCAGGACAGCTTAACCACATTAGATCTGCAATGCCAATCTTTACAAGAAGTGGATCTCTCTGAGTGTGAATCTTTGAATAACTCTGTATGCAATGTTTTTAATGATGGTGGAGGATGCCCGATGTTGAAATCATTAGTTCTTGATAATTGTGAGAGTTTGACATCAGTTCAATTCATCAGTTCCTCTTTAATCAGTCTTTCTCTTGGTGGTTGCCGGGCGATAACTAATCTTGATCTCGCATGCCCTAATCTTGAGAAAGTTATTTTGGATGGTTGTGATCATTTGGAAAGAGCATTATTTTGTCCAGTTGGTCTTTCATCTCTCAATTTGGGAATATGTCCAAAATTGAACACACTCAGCATTGAAGCACCGTTTATGATTTCGCTCGAGTTGAAAGGATGCGGTGTACTATATGAAGCAGTCATTAATTGTCCACACTTAACATCTCTTGATGCTTCCTTTTGCAGCCAACTAACAGATGCCTGCTTGTCCGCAACCACTGTCTCATGCCCACTGATTGAATCATTGATATTAATGTCATGCTCATTGATTGGTTCAGATGGTCTTCGATCTCTGTATTGTCTTCCAAATTTGACTTTTCTGGACTTATCGTACACTTTCTTGTTGAACTTGCAGCCTGTTTTTGATTCTTGTTTGCAACTAAAGGTGTTAAAGCTGCAGGCATGCAAATATCTCACTGACACATCGCTTGAACCTCTTTACAAAGGAGGTGCTTTACCAGCACTTCAGGAGTTGGACTTGTCTTATGGAACTCTCTGTCAGTCAGCCATAGATGAGCTTCTTGCTTGCTGCACAAACCTCACTCATGTGAGCTTGAATGGCTGTGTGAATATGCATGATTTGAATTGGGGATGCAGTCATGGGCAGATTGACAATTTCCCCGCTGTAAACACCCCATCTGAGGCAAGTTCTAATGAGAATGTCCCTGAATCAAGTGAGCAATCCACTCGCTTACTGCAAAACCTCAACTGCGTTGGATGTCCAAATATTAGGAAGGTTGTCATTCCATTGAGCGCaaattattgtcatttgttatttttaaacctTTCACTGTCAGCAAATTTGAAAGAGGTTGATATTACTTGTCTCAACCTATGCTTTCTTAACCTAAGCAATTGTTACTCTTTGGAAATTTTGAAGCTAGAGTGTCCAAGATTGACCAGTCTATTCCTTCAGTCTTGCAATATTGACGAGGAAGCTGCTGAAGCGGCTATATCAAAATGCTCTATGCTGGAGACTCTTGATGTTCGCTTTTGTTCAAAGATAAGCTCAATGAGCATGGGAAGATTACGCACAATTTGTTCAAGTTTGAAGCGTATATTCAGCAGTTCGTCAACTTTGTTACCTTGA 2730 0.4143 MERVSWNWRRSDGESSSGSAVAAEDTHRKRAKVYDDFDDFHCAIVKSSHTGKSSASAECGDCGDDFQGSSFRSNDDAFRLMSVGEESDFDEGDDGDISKVDDLEVKMDLTDDLLHMVFSFLDHPSLCKAARVCKQWRAASAHEDFWKSLNFEDRNIPVEQFEDICRRYPNVTAIRMSGPATASNQLVMTAISSLRSLEALTLGRGNIMDNFFHALANCSMLKRLSINDAVLGNGIHEISLNHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQTVLNCPLLQELDIGSCHKLPDSAIRSAVTSCPQLVSLDMSNCSCVSDETLREISLNCANLSFLDASYCPNVSLETVRLPMLTVLKLHSCEGITSASMAAISHSYMLEVLELNNCSLLTSVSLDLPRLQNIRLVHCRKFADLNLMTLMLSSIWVSNCPVLHRINITSNSLQKLTIPKQDSLTTLDLQCQSLQEVDLSECESLNNSVCNVFNDGGGCPMLKSLVLDNCESLTSVQFISSSLISLSLGGCRAITNLDLACPNLEKVILDGCDHLERALFCPVGLSSLNLGICPKLNTLSIEAPFMISLELKGCGVLYEAVINCPHLTSLDASFCSQLTDACLSATTVSCPLIESLILMSCSLIGSDGLRSLYCLPNLTFLDLSYTFLLNLQPVFDSCLQLKVLKLQACKYLTDTSLEPLYKGGALPALQELDLSYGTLCQSAIDELLACCTNLTHVSLNGCVNMHDLNWGCSHGQIDNFPAVNTPSEASSNENVPESSEQSTRLLQNLNCVGCPNIRKVVIPLSANYCHLLFLNLSLSANLKEVDITCLNLCFLNLSNCYSLEILKLECPRLTSLFLQSCNIDEEAAEAAISKCSMLETLDVRFCSKISSMSMGRLRTICSSLKRIFSSSSTLLP 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3587 909 PANTHER OS10G0396666 PROTEIN 23 868 IPR044703 GO:0010252|GO:1905393
Ssu1g3587 909 Pfam F-box-like 111 151 IPR001810 GO:0005515
Ssu1g3587 909 ProSiteProfiles F-box domain profile. 103 149 IPR001810 GO:0005515
Ssu1g3587 909 MobiDBLite consensus disorder prediction 1 26 - -
Ssu1g3587 909 PANTHER OS10G0396666 PROTEIN 23 868 - -
Ssu1g3587 909 SMART fbox_2 109 149 IPR001810 GO:0005515
Ssu1g3587 909 SMART LRR_CC_2 355 380 IPR006553 -
Ssu1g3587 909 SMART LRR_CC_2 308 333 IPR006553 -
Ssu1g3587 909 SMART LRR_CC_2 282 307 IPR006553 -
Ssu1g3587 909 SMART LRR_CC_2 534 559 IPR006553 -
Ssu1g3587 909 SMART LRR_CC_2 492 522 IPR006553 -
Ssu1g3587 909 SMART LRR_CC_2 401 426 IPR006553 -
Ssu1g3587 909 SMART LRR_CC_2 623 648 IPR006553 -
Ssu1g3587 909 SMART LRR_CC_2 597 622 IPR006553 -
Ssu1g3587 909 SMART LRR_CC_2 464 488 IPR006553 -
Ssu1g3587 909 SMART LRR_CC_2 671 696 IPR006553 -
Ssu1g3587 909 SMART LRR_CC_2 868 899 IPR006553 -
Ssu1g3587 909 SUPERFAMILY RNI-like 461 690 - -
Ssu1g3587 909 SUPERFAMILY RNI-like 130 398 - -
Ssu1g3587 909 SUPERFAMILY RNI-like 664 900 - -
Ssu1g3587 909 Gene3D Ribonuclease Inhibitor 354 507 IPR032675 -
Ssu1g3587 909 Gene3D Ribonuclease Inhibitor 102 353 IPR032675 -
Ssu1g3587 909 Gene3D Ribonuclease Inhibitor 663 750 IPR032675 -
Ssu1g3587 909 Gene3D Ribonuclease Inhibitor 760 908 IPR032675 -
Ssu1g3587 909 Gene3D Ribonuclease Inhibitor 513 662 IPR032675 -
Ssu1g3587 909 SUPERFAMILY F-box domain 108 139 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3587 Ssu-Chr1 91188385 91194075 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3587 - - gmx:100786178 1545.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3587 1 91188385 91194075 Ssu1g3587 1 91188385 91194075 ECH