Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3578 ATGGGTACTAAACAAGTATATTGGGCCATCACTGTAGTATGGCTTGCTTTGTTTGAAGGAAATATGATGCTTGTTAAGggtgattttaattataaggagGCTCTCACCAAGTCCCTTATCTTCCTAGAGGCACAACGTTCAGGGAAGCTCCCTTCAAATAATAGGGTGCCTTGGAGAGGGGACTCAGCACTCGATGATGGAAAATTCGCTAATGTGAACCTTGTTGGGGGATACTATGATGCAGGGGACAATGTCAAATATGGTCTCCCCATGGCTTTCACCGTTACTACGCTATCATGGGCTGCCATTTTTTACAGGTCAGAATTAAAAGCTGCAAAGGAGTTGGATAATGCTCACGATGCCATTCGTTGGGGTACCGATTATTTTCTGAAAGCTAGTTCTCGACACAAAAGATTATATGTGGAGGTAGGGGACGCGGAGGATGATCACCATTGTTGGGCTCCACCAGAGCATATGAAGACAAAGAGAACGGTTAAGAAGATTGATAGTGACACGCCCGGGACTGAGATTGCAGCTGAAACTGCAGCCGCAATGGCTGCTTCTTCCATTGTTTTTAGGTCCAAAGACCTTAAATATGCTCGTCGTCTTCTCAACAAAGCTAAATTGCTTTTCCAAATGGCTAAATCGCATAAAGGAACCTATGATGGAGAGTGCCCCTTCTACTGCTCCTATTCCGGCTATCATGACGAACTGATGTGGGCAGCAACGTGGCTATACATGGCTACCAGGAAGCCTATGTATATGAAGTACATAAAAGAAGAAACCATGAGTGCTAGTGTAGCAGAATTTAGTTGGGACCTTAAATATGCTGGAGCTCAAATCCTTCTCACCCAGTTACATTTTGAAGGTGAAAAGAATTTGGAAACATTCAAAAACCACGGCGATAGTTTCATATGCTCTGTCCTTCCTGATAGTCCCTACAACCAGATTAAATTGTCTCCTGGTGGGTTCATTCATTTGAGAGATGGAGCCAACACGCAGTATGCCACGGGCACGTCTTTCTTGTTCACTGTATATAGTGATTTGCTAGCCAAACATAAAGAGAAAGTCACCTGTGGAGACAAACAGTTTAGCTCGTCCCATCTCCTTGCTTTTGCTAAGAAACAAATGGATTACATACTAGGGAAGAACCCTGAAGGAAGATCGTACATGGTGGGATTTGGAAAGAACCCACCAACGCAAGCTCACCATAGAGGCGCTTCCGTGCCAAAGTTGAAAAAGGGCGAAGAGGTGGTTTGTGCCTTGAGCTTCTCGAAATGGCTTCTCAGAGATGAACCTAACCCCAATGAGCTCACTGGTGCCATTGTGGGTGGACCTGACCGCTTCGACAAGTTCAACGATAAACGTTGGGATTCACCCAAGACTGAGCCATGCACCTACGTCAATTCCCTAGCTGTGGGAGCTCTAGCCAAGCTTGCATCGTTGGGTTGA 1452 0.4483 MGTKQVYWAITVVWLALFEGNMMLVKGDFNYKEALTKSLIFLEAQRSGKLPSNNRVPWRGDSALDDGKFANVNLVGGYYDAGDNVKYGLPMAFTVTTLSWAAIFYRSELKAAKELDNAHDAIRWGTDYFLKASSRHKRLYVEVGDAEDDHHCWAPPEHMKTKRTVKKIDSDTPGTEIAAETAAAMAASSIVFRSKDLKYARRLLNKAKLLFQMAKSHKGTYDGECPFYCSYSGYHDELMWAATWLYMATRKPMYMKYIKEETMSASVAEFSWDLKYAGAQILLTQLHFEGEKNLETFKNHGDSFICSVLPDSPYNQIKLSPGGFIHLRDGANTQYATGTSFLFTVYSDLLAKHKEKVTCGDKQFSSSHLLAFAKKQMDYILGKNPEGRSYMVGFGKNPPTQAHHRGASVPKLKKGEEVVCALSFSKWLLRDEPNPNELTGAIVGGPDRFDKFNDKRWDSPKTEPCTYVNSLAVGALAKLASLG 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3578 483 Pfam Glycosyl hydrolase family 9 31 476 IPR001701 GO:0004553|GO:0005975
Ssu1g3578 483 SUPERFAMILY Six-hairpin glycosidases 27 481 IPR008928 GO:0005975
Ssu1g3578 483 PANTHER ENDOGLUCANASE 16-RELATED 7 480 - -
Ssu1g3578 483 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 379 405 IPR018221 -
Ssu1g3578 483 Gene3D - 25 483 IPR012341 GO:0005975
Ssu1g3578 483 PANTHER ENDO-1,4-BETA-GLUCANASE 7 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3578 Ssu-Chr1 91035648 91038126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3578 21 481 Glycoside Hydrolase AT3G43860 70.779 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3578 K01179 - gmx:100811509 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3578 1 91035648 91038126 Ssu1g3578 1 91035648 91038126 ECH