Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3570 ATGCACTTAAGGGTGCGAGCCACTTCCACTACGAACCCATTGACCCCACGCGTTCACCACATCCACTCTCTCCCTCAGTGGTTTTCCCTCCTCCGCCACGCCATTGCCGCCCCCGATTTACCCCTCGGGAGGCGCGCTCACGCGCGCATTCTAACGTCTGGCCACCGCCCCGATCGTTTCCTAACCAACAACCTCATCACCATGTACGCCAAATGCGGCTCCCTCTCCTCCGCGCACAAACTGTTCGACACAACGCCCGACACCGCCAGAGACCTCGTAACCTGGAACGCCATCCTAGCCGCCTACGCCAGCGCCGACAACACCAGCGAGGGCTTCCACCTTTTCCGCCTCCTCCGCCGCTCCGTCGTGTCCACCACGCGCCACACTCTCGCCCCCGTGTTCAAGATGTGCCTCCTCTACGGTTCCCCCTTCGCCTCCGAGTCCCTCCACGGTTACGCCGTTAAGATCGGGTTGGAATGGGACTTGTTCGTGGCCGGTGCTCTGGTCAACACATACGCCAAGTTCGGACGAATCAGAGAGGCGCGCGCGTTGTTCGACGGGATGGCCGTGAGGGACGTTGTGCTCTGGAACGTCATGATGAAGGCTTACGTGGACGCGTGCCTCGACGATGAAGCGTTGCTTTTGTTCTCCGACTTTCACCGAACTGGACTGCGTCCCGATCGCGTCACCGTGCTTACTCTCACGCGGCTTGGTAAAAGTAAAACTGTTCTCGAATGGCAGTTGAAGCAGCTTCGAGCTTGTGCCGCAAAATTGTTTCCgtgtgatgatgatgatgatgtgatTGCGCGGAACAAGACACTGTCTCGGTGTCTCCAGAGAGGTGAGGCTCGGGAAGCTGTTGATTGTTTTGTGGATATGATAAAGTCACGTGTGCCGTGTGATAGTTTAACGTTTGTTGTGATGCTGTCTGTGGTTGCCAATTTGAACTGTCGTGAACTGGGGAAGCAGATTCACGGTGTTGTCGTGAGGTCGGGGTGGGATGGAGTTGTCTCCGTTGGAAATAGCCTTATCAATATGTATGTTAAGGCTGGTTCCGTTTGCTATGCGAGAACGGTGTTTGGTCAAATGAATGAAGTGGATTTGATATCGTGGAACACCATGATATCTGGTTGTGCGTTGAGTGGTTTGGGGGAGTGTTCTGTTGGGTTGTTCGTTGATTTATTACGCAGTGGTCTGTTACCGGATCAATACACCATTGCGAGCGTTTTGAGGGCttgttcctctcttgaagaAGGTTGTTATCTTGGCGTGCAGATTCATGCTTGTGCGATAAAAGCTGGTGTTGTCTTGGATTCGTTTGTTTCAACGGCTCTGATTGATGTCTATTCCAAGAGTGGGAAGATGGAGGAGGCagaatttctttttgttaaccAAGATGGATTTGATTTGGCATCTTGGAATGCTATGATGCATGGGTATATAGTGAGTGGTGATTTTCCTAAGGCGTTGAGGCTTTACATGTTAATGCATGAGAGTGGAGAGAGAGCGGATCAGATTACTCTGGCGAATGCAGCTAAAGCTGCTGGGGGATTTGTGGGGCTTGAACAAGGCAAGCAAATTCATGCTGTTGTTGTGAAAAGGGGGTTTACTTTAGATTTGTTTGTCATTAGTGGTGTTCTTGATATGACTTCAGGTTCGGTTTTAGGTCTCCCAAGTGCACAAGATGATAAACTCTTCTGTTCAGGTTCAGCAGCTGCATATTCACAAGGAAGTTAA 1737 0.5009 MHLRVRATSTTNPLTPRVHHIHSLPQWFSLLRHAIAAPDLPLGRRAHARILTSGHRPDRFLTNNLITMYAKCGSLSSAHKLFDTTPDTARDLVTWNAILAAYASADNTSEGFHLFRLLRRSVVSTTRHTLAPVFKMCLLYGSPFASESLHGYAVKIGLEWDLFVAGALVNTYAKFGRIREARALFDGMAVRDVVLWNVMMKAYVDACLDDEALLLFSDFHRTGLRPDRVTVLTLTRLGKSKTVLEWQLKQLRACAAKLFPCDDDDDVIARNKTLSRCLQRGEAREAVDCFVDMIKSRVPCDSLTFVVMLSVVANLNCRELGKQIHGVVVRSGWDGVVSVGNSLINMYVKAGSVCYARTVFGQMNEVDLISWNTMISGCALSGLGECSVGLFVDLLRSGLLPDQYTIASVLRACSSLEEGCYLGVQIHACAIKAGVVLDSFVSTALIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYMLMHESGERADQITLANAAKAAGGFVGLEQGKQIHAVVVKRGFTLDLFVISGVLDMTSGSVLGLPSAQDDKLFCSGSAAAYSQGS 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3570 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Ssu1g3570 578 PANTHER BNAA08G11890D PROTEIN 394 462 - -
Ssu1g3570 578 PANTHER BNAA08G11890D PROTEIN 367 414 - -
Ssu1g3570 578 Pfam PPR repeat 93 120 IPR002885 -
Ssu1g3570 578 Pfam PPR repeat 167 190 IPR002885 -
Ssu1g3570 578 Pfam PPR repeat 443 462 IPR002885 -
Ssu1g3570 578 Pfam PPR repeat 63 83 IPR002885 -
Ssu1g3570 578 Pfam PPR repeat 194 221 IPR002885 -
Ssu1g3570 578 Pfam PPR repeat 369 399 IPR002885 -
Ssu1g3570 578 Pfam PPR repeat 472 500 IPR002885 -
Ssu1g3570 578 PANTHER BNAA08G11890D PROTEIN 18 366 - -
Ssu1g3570 578 PANTHER BNAA08G11890D PROTEIN 464 500 - -
Ssu1g3570 578 PANTHER BNAA08G11890D PROTEIN 501 550 - -
Ssu1g3570 578 Gene3D Tetratricopeptide repeat domain 144 250 IPR011990 GO:0005515
Ssu1g3570 578 Gene3D Tetratricopeptide repeat domain 420 516 IPR011990 GO:0005515
Ssu1g3570 578 Gene3D Tetratricopeptide repeat domain 268 419 IPR011990 GO:0005515
Ssu1g3570 578 Gene3D Tetratricopeptide repeat domain 9 143 IPR011990 GO:0005515
Ssu1g3570 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Ssu1g3570 578 TIGRFAM PPR: pentatricopeptide repeat domain 472 504 IPR002885 -
Ssu1g3570 578 TIGRFAM PPR: pentatricopeptide repeat domain 93 121 IPR002885 -
Ssu1g3570 578 TIGRFAM PPR: pentatricopeptide repeat domain 194 227 IPR002885 -
Ssu1g3570 578 TIGRFAM PPR: pentatricopeptide repeat domain 369 402 IPR002885 -
Ssu1g3570 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Ssu1g3570 578 PANTHER OS01G0913400 PROTEIN-RELATED 18 366 - -
Ssu1g3570 578 PANTHER OS01G0913400 PROTEIN-RELATED 464 500 - -
Ssu1g3570 578 PANTHER OS01G0913400 PROTEIN-RELATED 394 462 - -
Ssu1g3570 578 PANTHER OS01G0913400 PROTEIN-RELATED 501 550 - -
Ssu1g3570 578 PANTHER OS01G0913400 PROTEIN-RELATED 367 414 - -
Ssu1g3570 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3570 Ssu-Chr1 90895871 90899495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3570 129 551 Glycoside Hydrolase AT3G49170 26.739 1.78e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3570 - - gmx:102661570 882.478