Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3568 ATGCCAGTGCATGTTCACATTCCACCTGAGCTTCTATACGTTCTTGATGTTAAAAGAGATGTGTTGAAGTCACTTTACTTGCTCCCATCTCTGATGTACCGCATTGAATCTTTAATGTTATCCAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTAGCAAGTCCAACATACGTAGCTCACTGATCCTAGAAGCACTCACAACTTTGAGATGTAGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAGTATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACATGAAGGACAATTATCTGCCGGACGATCACAGGCTGTTTGTAATTCAACCCTACTTAGACTGGGGACAGATCGCAAATTACAGGGATATATTCGAGACTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCTTTCTATATACGCTGTTGGTTGTGGCTGTGGGTTTGAAACCCTAGAAGTGCCTTTAGAATTCCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTCTGTGACAAGGGTCACCGCTGGATGTGCTCAAAGACTATTGCTGATTGTGTTGAAGCTCTGATAGGAGCATACTACGTGGGTGGTGGACTCTTTGCTTCACTTAGTGTGATGAAATGGCTTGGGATTGGTGCTGAACTTGACCTATCCTTGGTTGATGAAGCAATTACTGCTGCATCTCTGCGTACATGTGTGCCAAAAGAAAGTGAGATTGCAAGccttgaaaagaaaattgggTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCAATCACACATTTATCTGAAAAAGAACTTGGGATTGGCTACTGTTATGAGAGGCTTGAATTTCTTGGTGACTCGGTATTGGACCTGCTTATAACATGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGTTGTTGACTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCCCCACCTTCTACATAGCTCAGGATTATTACTGAGCCAGATATCAGAATATGTGAAGGTCATTTCTGAATCAGATACCCGATCACTCCCAAGCATTAGAGCTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAATTGATGCCAAGCTCAGTCTTGACCAAGTGTGGAAGGTTTTCTATCCTCTATTATCTCCCATTGTTACTGATAAGCTTGAATTGCCTCCATTTCGTGAATTAAATGAATTATGTGATTCACTCGGGtattttgtaaaagtaaaagaaaaatgtgaaaaaaagggATCCCCGGTGCATGTTGAGGTTAGTGTAAAGCTGCCAAATGCCCTATTGGTTCATCAAAGAATGGGGGCAAACAAAGAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGAACTTGAGAAGTGGGGAATTTCACGTGGTAGTATCATGTCCAAGGGAAAAAGAGATAATCCAAACCATATCTATTATTCATCTCATCACAAAATGGATTCTAGTATTTGTTCTTCTCTAATTGAGGAACATTCCTCAGAGCCAGCATCACATAAAAGGCCCAGATTGGATGAAACTAACTTAACTGCAAGTTTGTTACCTCTCAAAGACTCTTCCAGTGACATCTCTGGTTTTAAAGCTTTCATTCCAGttaatttatcaaatatgaaGACGGGAGGACTGCGGACCATACTATATGGACTGTGTAAGAAACTGCAGTGGCCAGTGCCTGCATTTGATTCAACAGAATATAAAGATAGATCTCCATTTAAATCCTGTGAAGGCCTGGAAGGAAGCAAGGGACATAATAACTGTTTTGTGTCGAAAATTACCTTGTGCATACCCAATTATGGTAATATAGAATGCAAAGGAGAAGCTAGAAGTGACAAGAGCAGCTCTTTCGACTCTGCTGCAGTTCAAATGCTTCGTGAGCTACATAGACTGGGAAAGGTTGAAATTTATCCTCCCCCTTCTTAG 2028 0.4024 MPVHVHIPPELLYVLDVKRDVLKSLYLLPSLMYRIESLMLSSQLREEIDGQTSKSNIRSSLILEALTTLRCSENFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSAGRSQAVCNSTLLRLGTDRKLQGYIRDSAFEPRRWVAPGQLSIYAVGCGCGFETLEVPLEFHTEDPKVVVGKFCDKGHRWMCSKTIADCVEALIGAYYVGGGLFASLSVMKWLGIGAELDLSLVDEAITAASLRTCVPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGYCYERLEFLGDSVLDLLITWHLYQSHTDIDPGLLTDLRSASVNNDNFAQVAVRHNLHPHLLHSSGLLLSQISEYVKVISESDTRSLPSIRAPKALGDLVESIAGAILIDAKLSLDQVWKVFYPLLSPIVTDKLELPPFRELNELCDSLGYFVKVKEKCEKKGSPVHVEVSVKLPNALLVHQRMGANKETAKGEAAFHLLKELEKWGISRGSIMSKGKRDNPNHIYYSSHHKMDSSICSSLIEEHSSEPASHKRPRLDETNLTASLLPLKDSSSDISGFKAFIPVNLSNMKTGGLRTILYGLCKKLQWPVPAFDSTEYKDRSPFKSCEGLEGSKGHNNCFVSKITLCIPNYGNIECKGEARSDKSSSFDSAAVQMLRELHRLGKVEIYPPPS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3568 675 SUPERFAMILY RNase III domain-like 251 415 IPR036389 GO:0004525|GO:0006396
Ssu1g3568 675 ProSiteProfiles Ribonuclease III family domain profile. 252 395 IPR000999 GO:0004525|GO:0006396
Ssu1g3568 675 CDD RIBOc 268 415 IPR000999 GO:0004525|GO:0006396
Ssu1g3568 675 Gene3D - 584 664 - -
Ssu1g3568 675 ProSiteProfiles Ribonuclease III family domain profile. 41 211 IPR000999 GO:0004525|GO:0006396
Ssu1g3568 675 SMART riboneu5 267 418 IPR000999 GO:0004525|GO:0006396
Ssu1g3568 675 SMART riboneu5 60 231 IPR000999 GO:0004525|GO:0006396
Ssu1g3568 675 CDD RIBOc 60 222 IPR000999 GO:0004525|GO:0006396
Ssu1g3568 675 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 3 667 - -
Ssu1g3568 675 Gene3D Ribonuclease III domain 42 222 IPR036389 GO:0004525|GO:0006396
Ssu1g3568 675 Gene3D Ribonuclease III domain 236 417 IPR036389 GO:0004525|GO:0006396
Ssu1g3568 675 SUPERFAMILY RNase III domain-like 55 230 IPR036389 GO:0004525|GO:0006396
Ssu1g3568 675 Pfam Ribonuclease III domain 288 394 IPR000999 GO:0004525|GO:0006396
Ssu1g3568 675 Pfam Ribonuclease III domain 78 210 IPR000999 GO:0004525|GO:0006396
Ssu1g3568 675 ProSitePatterns Ribonuclease III family signature. 288 296 IPR000999 GO:0004525|GO:0006396
Ssu1g3568 675 PANTHER DICER-RELATED 3 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3568 Ssu-Chr1 90859652 90864979 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3568 K11592 - gmx:100806831 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3568 1 90859652 90864979 Ssu1g3568 1 90859652 90864979 ECH