Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3564 ATGGCAGCGGAAGACAGGTGGTGCGTGGTGACCGGAGGTCGGGGTTTCGCGGCTAGGCATTTGGTGGAAATGTTAATCCGATACAACGAGTACTGCGTTCGCATCGCCGATTTGGAAGCCAGCATTGTTCTCGAACCGGCAGAGCAGTTGGGGCTTCTCGGCCAGGCTTTGCACTCCGGTCGGGCCCAATATGTCTCCCTCGATCTTCGCAACAAGGCCCAAGTCTTAAAAGCATTGGAGGGAGTTGAGGTGGTGTTCCACATGGCTGCTCCGAACTCGTCTATTAACAACTACCAGCTTCATCATTCCGTCAATGTGCAAGGGACGAAGAATGTCATCGATGCTTGTGTGGAGCTGAACGTGAAGCGACTTATTTACACCAGCTCTCCTAGCGTGGTCTTTGATGGCGTTCATGGAATTCATAATGGAAACGAATCAATGCCTTATACTCCTTCGCCTAATGATCATTATTCAGCGACTAAAGCCGAGGGTGAGGCATTGGTTATTAAATCTAATGGGACTAATGGGCTCCTAACGTGCTGCATACGCCCTAGCAGCATTTTTGGGCCCGGTGATAAACTGCTGGTGCCTTCACTAATTGACGCTGCCAGAAAAGGAAAATCCAAGTTCCTTGTTGGCGATGGCAATAATGTTTATGATTTCACATATGTTGAAAATGTGGCTCATGCCCATACATGTGCTGAACGAGCTCTAGCTTCAGGAGGGCCAGTTTCAGAAAAAGCTGCAGGAGAGGCATATTTCATAACAAATATGGAGCCTATGAAATTTTGGGAGTTCGTGTCAGTGGTATTGGAAGGTCTTGGATATGAAAGGCCAAGAATAAAGATCCCTACCTTTGTTATCATGCCCATTGCACATTTGGTGGAGTGGATATATAGGCTGCTAGGCCCATATGGGATGAAGGTGCCTCAGTTAACCCCTTCAAGAATAAGACTCACGACTTGCAGCAGAACTTTTGATTGCTCAAAAGCAAAGGATCGCCTTGGCTATGCACCCATCATAACACTACAGGAGGGTCTGCGGAGGACAATTGAATCATACACACACCTGAGGGCTGAAAATCAGCCTGAAACTATAAGAGAAGGTCCCTCAAAAGCTTTCAAATATCTTGGAAGTGGAAGAGTTGCTGACACATTGCTTTGGAAGGATAAAAAGCAAACTTCTGTTGCATTGTTAGTCTTGATTGCAATATACTTCAACTTCATTGCATCTGAAAATACCATCGTTAGTGCTCTGACAAAGCTTCTATTGTTCGCATCgatctttttattcattcatgGCATTCTACCTGCAAAAATGTTGGGGTATACTGTTGAGAAAATGCCCAAATCATGGTTTCACTTAACAGAAGATATGTCACATCAAATTGCTTTCTCAGTGGCCTTATCATGGAATATTGCTGTGAATATCTTGAAATCCCTTGCAGAAGGGAATGATTGGGTGCTTTTCTTCAAGGCTGTTTTCTCTCTGCTCATTCTCAGCTTCCTTGGAGCCTTTTCAGTTCAGAACTTGTATACTAtagGAATTACCTTTGCATTTATAGCTTTCTACATATACGAAAAGAAGGAGGAAGACATTGATgggatatttattaaaacacaTTCTTTTGGATGCAAATTGAAATCTGATTTCACCAGGAAGTTTATTTCTTCAAAGAAGATTGATTGA 1689 0.4298 MAAEDRWCVVTGGRGFAARHLVEMLIRYNEYCVRIADLEASIVLEPAEQLGLLGQALHSGRAQYVSLDLRNKAQVLKALEGVEVVFHMAAPNSSINNYQLHHSVNVQGTKNVIDACVELNVKRLIYTSSPSVVFDGVHGIHNGNESMPYTPSPNDHYSATKAEGEALVIKSNGTNGLLTCCIRPSSIFGPGDKLLVPSLIDAARKGKSKFLVGDGNNVYDFTYVENVAHAHTCAERALASGGPVSEKAAGEAYFITNMEPMKFWEFVSVVLEGLGYERPRIKIPTFVIMPIAHLVEWIYRLLGPYGMKVPQLTPSRIRLTTCSRTFDCSKAKDRLGYAPIITLQEGLRRTIESYTHLRAENQPETIREGPSKAFKYLGSGRVADTLLWKDKKQTSVALLVLIAIYFNFIASENTIVSALTKLLLFASIFLFIHGILPAKMLGYTVEKMPKSWFHLTEDMSHQIAFSVALSWNIAVNILKSLAEGNDWVLFFKAVFSLLILSFLGAFSVQNLYTIGITFAFIAFYIYEKKEEDIDGIFIKTHSFGCKLKSDFTRKFISSKKID 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3564 562 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 4 384 - -
Ssu1g3564 562 ProSiteProfiles Reticulon domain profile. 382 534 IPR003388 -
Ssu1g3564 562 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 356 IPR036291 -
Ssu1g3564 562 Pfam Reticulon 382 537 IPR003388 -
Ssu1g3564 562 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 384 - -
Ssu1g3564 562 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 9 283 IPR002225 GO:0003854|GO:0006694|GO:0016616
Ssu1g3564 562 Gene3D - 1 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3564 Ssu-Chr1 90787370 90794589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3564 9 354 Lipid Metabolism Gene Families AT2G33630 32.143 7.76e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3564 K23558 - gmx:100816854 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3564 1 90787370 90794589 Ssu1g3564 1 90787370 90794589 ECH