Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3563 ATGATTTCCACAATGAGTTGGGATGAGAACGATGAGTTTGAGGTCCCTCTTACCCAAGCGACAGCAACTTTTCACGTGCTCTCCCCCGTTGATAATAATCAACGGCCGTTCAAGAAACCTAAACGCAAAACGACGACGTTTCATGGCATTGGCAAGGAGAACGTTCCTCCTACTACCCCCTCCGAACCCAGGGAGGGTTGCGAAATTGAGAACTGCAGCTTGGATCTCATTCCTTCCACCATAGATTGTGTTTGCAGCGTTCAACATTCGGGACAAGAGGACGTTGTTTCTTCTACTTCTGCGTCTTTATCGGAGCTAAAAACGAAGGGGAATTATCTTCGCAACTCGATAGAGTCGAAGCTGGTGGTTTCGAGAACCGACGCACTTAACTGCGCAGATGCAGACTCTGATTCGGAGCTTGATCTGTTGCTGAATTTATGCGACGAGTTAGAGGAAGTAGATAGTTCCGTTCGGTGTCCCCTATGTGAGGTCGATATTTCGAACTTGACCGAGGAACAGCGACATCTTCACACCAATAATTGTCTTGACGAAGGAGATGACGTTGCGGTTCCTGATGACGAGAAGGGTGCTCAACACGTGCCAAAAGTCGCTTCTGTTGTTGATTGGCTACGCGGGCTCGGTTTGGGGAAGTATGAAGATGTTTTCGTTAGGGAAGAAGTTGATTGGAACACCTTGCAATGGCTCACAGAAGAGGATCTCTTAAGCATGGGTATCACTGCACTTGGGCCCAGAAAAAAGATTGTGCATGCCTTGTGTGAACTTAGAAAAGGAGATGCCCCTACAAACGGGAAACAAGAGGATGCTCTGGGAGAGCCTAGAAAGATTAGAAACcagaaagttaaattaaaacatgacaAATCTGAGAGAAAAGTTGATGGCACTAGTAAACCAGTGGCAAACAAATTAATTACTGAATATTTTCCGGGCTTTGCTTCCAAAGAGAAGAAAGTTTCCGCCACTTCTGGAGAACAACAGGAAATGAAAAACAGTGGCTTGGATTCTGGTCGtaagaataaatcaaaaaatatgcCAACAAATAGAAAGCTTCGTGATGTTCCCAAATGGTGTGCCGTACAAGGAACACCTTTCCGAGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCCCACTGGTTTCTCACACACTTCCACTTGGACCATTATCAAGGTCTCACCAAGTCGTTCAATCATGGAAAGATCTATTGCTCCTCCATTACAGCTAGACTTGTAAATATGAACATTGGGGTTCCATATGATAAATTACATGTTTTGCCTCTGAACCAAAAGGTAGAAATAGCTGGTATTGATGTCACTTGCTTGGATGCCAACCATTGTCCAGGTTCCATTATCATTCTCTTTCAACCTCCAAATGGTAAGGCAGTGCTTCACACCGGTGATTTCCGCTTTACTGAAGAAATGACAATCAATCCTTTATTGCAGATGTGTCCTATAAATACTCTAATTCTTGATACAACATACTGCAACCCACAGTATGACTTTCCAAAGCAAGAGGCTGTAATACAATTCGTTATTGATGCCATTCAAGCTGAAGCTTTTAATCCCAAGACTCTTTTTCTGATTGGCAGCTATACAATTGgaaaagaaaggCTATTCTTGGAGGTTGCTCGTTCCCTTCATAAAAAGGTTCACGTGACTGCGGCAAAGTTGCgtcttttaaaatgtttggaATTTAAGGAGGAGGATATACGGTGGTTTACTTCAAATGAACATGAAAGCAACATTCACGTTGCCCCTATGTGGACGCTCGCAAGCTTCAAAAGATTGAAGCACATATCAAGTCAATATAAGGATCGGTACAATCTTATAGTTGCTTTCTCCCCCACTGGCTGGACGTTTGGCAAAGGTAAAAAGAAGTCTCCTGGAAGAAGATGGCAGCAGGGTACAATCATTAGGTATGAAGTGCCTTACAGTGAGCATAGCAGCTTTACAGAACTCAAAGAATTTGTAAAACTTGTATCTCCTGATAACATTATACCAAGTGTGAATAATGATGGACCAGAATCTTCTGAAGCAATGGTTTCTCTATTGTTATCTTGA 2079 0.4185 MISTMSWDENDEFEVPLTQATATFHVLSPVDNNQRPFKKPKRKTTTFHGIGKENVPPTTPSEPREGCEIENCSLDLIPSTIDCVCSVQHSGQEDVVSSTSASLSELKTKGNYLRNSIESKLVVSRTDALNCADADSDSELDLLLNLCDELEEVDSSVRCPLCEVDISNLTEEQRHLHTNNCLDEGDDVAVPDDEKGAQHVPKVASVVDWLRGLGLGKYEDVFVREEVDWNTLQWLTEEDLLSMGITALGPRKKIVHALCELRKGDAPTNGKQEDALGEPRKIRNQKVKLKHDKSERKVDGTSKPVANKLITEYFPGFASKEKKVSATSGEQQEMKNSGLDSGRKNKSKNMPTNRKLRDVPKWCAVQGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNMNIGVPYDKLHVLPLNQKVEIAGIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFTEEMTINPLLQMCPINTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPKTLFLIGSYTIGKERLFLEVARSLHKKVHVTAAKLRLLKCLEFKEEDIRWFTSNEHESNIHVAPMWTLASFKRLKHISSQYKDRYNLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHSSFTELKEFVKLVSPDNIIPSVNNDGPESSEAMVSLLLS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3563 692 Pfam SAM domain (Sterile alpha motif) 202 260 IPR001660 GO:0005515
Ssu1g3563 692 Pfam DNA repair metallo-beta-lactamase 575 678 IPR011084 -
Ssu1g3563 692 Gene3D - 198 273 IPR013761 -
Ssu1g3563 692 MobiDBLite consensus disorder prediction 31 64 - -
Ssu1g3563 692 Pfam Beta-lactamase superfamily domain 386 505 IPR001279 -
Ssu1g3563 692 SUPERFAMILY Metallo-hydrolase/oxidoreductase 370 674 IPR036866 -
Ssu1g3563 692 SMART SAM_4 198 264 IPR001660 GO:0005515
Ssu1g3563 692 ProSiteProfiles SAM domain profile. 201 264 IPR001660 GO:0005515
Ssu1g3563 692 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 157 688 - -
Ssu1g3563 692 CDD SNM1A-1C-like_MBL-fold 346 503 - -
Ssu1g3563 692 CDD SAM_superfamily 205 258 - -
Ssu1g3563 692 Gene3D - 506 653 - -
Ssu1g3563 692 SUPERFAMILY SAM/Pointed domain 202 263 IPR013761 -
Ssu1g3563 692 MobiDBLite consensus disorder prediction 324 355 - -
Ssu1g3563 692 Gene3D - 366 675 IPR036866 -
Ssu1g3563 692 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 157 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3563 Ssu-Chr1 90780879 90787077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3563 204 258 Glycosyltransferase AT3G07170 47.273 7.17e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3563 K15340 - gmx:100816321 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3563 1 90780879 90787077 Ssu1g3563 1 90780879 90787077 ECH