Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3561 ATGGCTAGTGAACGTGATCTTTTCTCGGCGGAGATTGTGAACCGTGGAATTGAATCGTCTGGACCCAACGCTGGCTCATTGACCTTCTCTGTGAGGGTGAGGAGGCGCCTGCCGGATTTTCTTCAATCGGTGAACCTTAAGTACGTGAAATTGGGTTACCATTATCTCATAAACCATGGCATATACTTGTTCACCATACCCGTTCTTCTGGTGGTGTTCAGTGCTGAGGTTGGCAGCCTCAGCAAAGAGGACCTATGGAAGAAGCTTTGGGAAGACGCGCGTTATGACCTTGCCACTGTTCTCGCTTCCTTTGGCGTCTTCGTTTTCACCTTGTCCGTCTACTTCATGTCAAGGCCACGTCCCATTTACCTCGTTGATTTTGCATGCTATAAGCCCGAAGATGAACTCAAGGTGTCAAGGGAGCAGTTCATGGAGCTAGCAAGGAAATCGGGCAAGTTCGACGAAGCGAGTCTGGAGTTCCAAAAGAGGATGCTAATGTCGTCGGGAATAGGCGACGAGACCTACATCCCGAAGGCCGTGATAGCGTCCAGCGAGAACACCGCAACGATGAAAGAGGGTCGCGCGGAGGCCTCGGCGGTGATGTTCGGCGCGCTGGACGAGCTTTTCGAGAAAACCCGCGTCCGGCCGAAGGACGTGGGCATTCTGGTGGTGAACTGCAGCATCTTCAACCCGACGCCGTCGCTGTCGGCGATGATCATAAACCACTACAAGATGAGGGGGAACGTCCTGAGCTACAACCTCGGCGGGATGGGGTGCAGCGCGGGGATCATAGGCGTGGACTTGGCCAAGGACGTCCTTCAAGCGAACCCCAATAACTACGCGGTGGTGGTGAGCACCGAGATGGTGGGCTTCAACTGGTACCAGGGGAAGGACAGGTCCATGCTCATCCCCAACTGTTTCTTCCGCATGGGCTGCTCCGCCGTCTTGCTCTCCAACCGTCGTCGGGACTATAGCCGCGCCAAGTACCGCCTGGAGCACATTGTTCGCACGCACAAGGGGCTGACGACCGCAGCTTCAGTAATAAATATCTGCTACACAAACAGGTGTGTGTACCAAGAGGAAGATGACCAAAAACTCAAGGGACTAAAGATCAGCAAAGACCTAATTGAAATTGGTGGTGATGCTCTAAAAACTAACATCACTACACTAGGACCCTTGGTGCTACCCTTTTCTGAGCAGCTTCTCTTCTTTGGCACCCTTGTGTGGAGGCACCTATTTGGCAGCAAATCTGGTGGGAATTCACCGTCATCAATGAAGAAGCCTTACATTCCTGACTACAAACTGGCTTTTGAGCACTTTTGCGTGCATGCTGCAAGCAAGACCATTCTTGATGAGCTTCAAAGGAACTTGGAACTGAGTGACAAGAACATGGAGGCATCTAGGATGACACTGCACCGCTTTGGCAACACTTCTAGCAGCAGCATTTGGTATGAGCTGGCTTACATGGAAGCAAAGGAGAGTGTGAGAAGAGGGGACCGTGTTTGGCAACTCGCTTTTGGCTCTGGCTTCAAGTGCAACAGTGTGGTTTGGCGTGCCATGCGCCGCGTCACCAAGCCTTCTAGGAACCCTTGGCTTGACTGCATCAACAGATATCCTGCGCCTCTCAACTGA 1632 0.5245 MASERDLFSAEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGIYLFTIPVLLVVFSAEVGSLSKEDLWKKLWEDARYDLATVLASFGVFVFTLSVYFMSRPRPIYLVDFACYKPEDELKVSREQFMELARKSGKFDEASLEFQKRMLMSSGIGDETYIPKAVIASSENTATMKEGRAEASAVMFGALDELFEKTRVRPKDVGILVVNCSIFNPTPSLSAMIINHYKMRGNVLSYNLGGMGCSAGIIGVDLAKDVLQANPNNYAVVVSTEMVGFNWYQGKDRSMLIPNCFFRMGCSAVLLSNRRRDYSRAKYRLEHIVRTHKGLTTAASVINICYTNRCVYQEEDDQKLKGLKISKDLIEIGGDALKTNITTLGPLVLPFSEQLLFFGTLVWRHLFGSKSGGNSPSSMKKPYIPDYKLAFEHFCVHAASKTILDELQRNLELSDKNMEASRMTLHRFGNTSSSSIWYELAYMEAKESVRRGDRVWQLAFGSGFKCNSVVWRAMRRVTKPSRNPWLDCINRYPAPLN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3561 543 PANTHER 3-KETOACYL-COA SYNTHASE 10 4 540 - -
Ssu1g3561 543 Pfam FAE1/Type III polyketide synthase-like protein 114 411 IPR013601 GO:0006633|GO:0016020|GO:0016747
Ssu1g3561 543 SUPERFAMILY Thiolase-like 308 521 IPR016039 GO:0016746
Ssu1g3561 543 PANTHER 3-KETOACYL-COA SYNTHASE 4 540 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ssu1g3561 543 Coils Coil 450 470 - -
Ssu1g3561 543 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 438 518 IPR013747 -
Ssu1g3561 543 Gene3D - 120 519 IPR016039 GO:0016746
Ssu1g3561 543 SUPERFAMILY Thiolase-like 108 326 IPR016039 GO:0016746
Ssu1g3561 543 CDD CHS_like 98 517 - -
Ssu1g3561 543 PIRSF Very_long_ch_3-ktacl-CoA_syn 39 543 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3561 Ssu-Chr1 90652869 90658332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3561 2 542 Miscellaneous Gene Families AT2G26250 74.419 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3561 K15397 - gmx:100818799 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3561 1 90652869 90658332 Ssu1g3561 1 90652869 90658332 ECH