Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3558 ATGGAATGCAATGATCAGTGTGGCCAAAGTGCTGTAAGCTTGAAGAGAAAGTCACCAGAAAATGGAGATCATCTACTCTTTAACACCTTTTCTCTGGATGACCTTGATGAAGATCTCTTTGAAAGGATACTTTCCTGGCTTCCAACTTCCACATTCTTTCGCCTAAATTCTGTGTGCAAAAGATGGAAATCAGTTGCTGCTTCTGCCAGTTTCAAGCTTGCCTGCTCTGACATTCCCTCAAGGGATCCTTGGTTTTTAATGGTTGCTCCCAACCTTAACCAATCTGTTATCTTTGACTCTGCTGAGAGCACTTGGAAAAGACTAAACCACCCACCTCTTCTGCAAGAAGAATCTAACCAAAATTGCATGCCAGTTGCAGCCTCTGGTGGCTTGATTTGCTACCGTAAATTATCAGGAAACTTCATTGTAAGCAACCCCGTGACAGGATCTTGTAGAGAACTCCCTCCACTGCACTTTGCCCCACAACACCAACCTCTCAATGCCATTGTGATGAGCACAACTTCCAAAGATCAACTCTCCTTCAAAATTGTGCTAGTCTTTGGTGAACTTCCAAATCTCTTGTTTAAAGTCTACAATTCAAGCTCTGGCTGTTGGGAGGGTGAGACTGCTTTGAGGAGAAAGATTGAAGACAATTCCATGGAATATGCTTCCACTGGTGACAATGTTGTGTACTTCCTCAGCAAGGCTGGAATTGTTGTGGCAAGCAACATGCAGAGAAGCCCCTCTAAGCAATTTTCATCGGTTATTGCCAACAAAGATGGCCAAGAGATTGTGTATTTTCTTAGCTCCTCAGGGAATGTAGTGGCTTGCAATTTGACATGCAAGTGCTTCTTTGAGTACCCCAGGTTGTTGCCTGTTTTTAGTGAGTATTCCATTGATGTTGTGGAGTGCCAAGGGGAGATGCTAGTTGTTTTGTTATCAGAATTCTTGGAAACTGCTACCCTTAGGGTGTGGAAATATGATGAGGCTAATAGAGGGTGGCATCAGATTGCAGCAATGCCTGCAGCAAATTCTCATGAGTGGTATGGAAAGAAGGCAGATATTAACTGTGTTGGGGCTGGTAACcaaatctttatatgcttgagcTCCCCTGAGCTATGCACTTATGTTCTGTGTGATTTGGAGACCAACAAGTGGGTTGAATTGCCAAAATGTTGCATAAATGGAGAAGTCATAGATTTTATGTCTGCCTTTTCATTTGAGCCTCGGATAGAGGCTTCTGTGTGA 1248 0.4271 MECNDQCGQSAVSLKRKSPENGDHLLFNTFSLDDLDEDLFERILSWLPTSTFFRLNSVCKRWKSVAASASFKLACSDIPSRDPWFLMVAPNLNQSVIFDSAESTWKRLNHPPLLQEESNQNCMPVAASGGLICYRKLSGNFIVSNPVTGSCRELPPLHFAPQHQPLNAIVMSTTSKDQLSFKIVLVFGELPNLLFKVYNSSSGCWEGETALRRKIEDNSMEYASTGDNVVYFLSKAGIVVASNMQRSPSKQFSSVIANKDGQEIVYFLSSSGNVVACNLTCKCFFEYPRLLPVFSEYSIDVVECQGEMLVVLLSEFLETATLRVWKYDEANRGWHQIAAMPAANSHEWYGKKADINCVGAGNQIFICLSSPELCTYVLCDLETNKWVELPKCCINGEVIDFMSAFSFEPRIEASV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3558 415 SUPERFAMILY Galactose oxidase, central domain 95 392 IPR011043 -
Ssu1g3558 415 SMART fbox_2 35 75 IPR001810 GO:0005515
Ssu1g3558 415 PANTHER F-BOX PROTEIN FAMILY, ATFBX13-LIKE PROTEIN 23 415 - -
Ssu1g3558 415 PANTHER F-BOX/KELCH-REPEAT PROTEIN 23 415 - -
Ssu1g3558 415 Gene3D - 27 72 - -
Ssu1g3558 415 ProSiteProfiles F-box domain profile. 29 74 IPR001810 GO:0005515
Ssu1g3558 415 Pfam F-box domain 32 67 IPR001810 GO:0005515
Ssu1g3558 415 SUPERFAMILY F-box domain 30 87 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3558 Ssu-Chr1 90597875 90599122 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3558 - - gmx:100786481 766.148