Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3557 ATGCTTGTCTCGGGAGTGTCGTCATCATGGGATCTGAAATGGCTCCTGCAGTTCGTATTCTCGGCGTTCGTGGTGGCGATTGGACTGCACGCGTTGGTGAAGAACACGGCGTCGAAGTACTTCGAGGTTGACGCGAGTTTCGAGGGGGAACAACACCACCGCGCCATGCCTGGTCTTCTCACGGACGATTCTCTCTGCGCCGTTTGTCGCAACCCCGGCAACAAGAAGTGTTCACGCTGCAAATCCGTTCGATACTGTTCACAAGCATGCCAACAGGCGCACTGGAAATCCGAGCACAAGATGAGATGCAAGGAGTTTCAGAGCAGTACCAGTGCGATGAATTTGGCTCAAACTGGACTAACTAATCGAGGGTTCAGAGCTTCTGCTGCTGTGAATGGAAGTACATCTTCGATTGCACTGATTCCTGAATGTGGTCGCGGAACTTCTAGGCCTATCAAGCAGCCTAAAAATGTTCTTTTTCCTTATGATGAATTTGTCAAATTGTTTAACTGGGACAAGCCAGGATTTCCTCCTTGTGGACTCTTAAATTGTGGAAACAGCTGCTTTGCGAATGTGGTTCTCCAATGTCTCTCGTTCACAAGGCCGCTTATTGCCTACTTGTTGGAGAAGGGCCACCGCAGAGAATGCTGTCCTAATGATTGGTGCTTTCTATGTGAATTTGAAGCCCATGTTGAAAAGGCAAGGCTAAGTTCTTCTCAGGCATTTTCTCCGATGAATATTCTCTCTCGTTTGCCTAATATTGGTGGCACACTTGGTTATGGAAGACAAGAGGATGCTCACGAGTTTATGAGGTTTGCCATTGATGCTATGCAATCTGTCTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTCCTACGCATCAGGAAACAACCCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGgttatttgCACCGAATGTGAGAAGAATTCgaatcaatatgaaaatatgaTGGACTTGACAGTTGAAATTCATGGTGACGCTGCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGCCAAGGAGTGGCTTCATGGGGATAATATGTATAAATGTGATGGGTGCAAGGTATATGTCAAGGCATGGAAACGTCTCACAGTGAAACGAGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAATAAGAGAGTGACTTTCCCTGAGACTTTAGATCTTAGCCCGTACATGAGTGAAGTTGGAGACGGATCTGATATTTATAAGCTATATGCTGTTGTGGTACATATTGATATGCTGAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCCGTGGAAACTGGTATAGAATTGATGATTGGAAGGTCATGAGTGTGGAATTGGAAGAGGTGCTTTCTCAGGGCGCATACATGCTGTTGTATAGCAGGGTTAGTGCTCGACCATCAGGACTTCAAAGTATCGAATCATCAGGGACAGCTGAAGTGAAAACAGTCAAATTGGAGGTGCAGTCTGGCCCAACTGAACAAGCTGAATGCCTCTCGGATATGAAAACTGGGACTTACAGTAGAGGATGTGAGGCTTCTCCATCTGACAGTCCCGAGTTGAAGGTTTCTGGCTGTGAAAACGCGTCTTTGACTGAAATGAACTCTGGAATTAAAAGAGAGCATTCCAAGGATGTGGACATTATTGAAGTTGCAAACGAGGCTTTCTGTAATGGTGTTGAATCATCTTATATGCATGATTCTGAAGCTGTCAATGATTTTGGGGATACAGATATGGACGGATCAAATACATGCTCATCTGTTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGATAGTGATATGGTTAAGTCCAGTCCTTCTCCATGTTTGCCAAATGGCTTTTCTTGCTCTGACAAGGATTCTTCTGTTTCAGTGGATTATCAAAACACAAAGGAAGATTCAGCTTCAGAACATGTAGATGTTATTAAATGCAAGGTAACAGCAAATGGCTTTGCAAATTATAGCAATGGGTATGCCAGTGCAAACAAATGTGATGTCCCAGTGGAAGATGGTGATGGTTCTTTTAACACTGAAACACCCTCAGCTGAAATGCATCAATTGAAGTGGAGATTGGCTTCTGACAATTCTGAAGCTGACAAAGGAAATGGAGTTAAGAAAGTGGAAATGACAGGGAACAAGTTAATAATTTAG 2229 0.4338 MLVSGVSSSWDLKWLLQFVFSAFVVAIGLHALVKNTASKYFEVDASFEGEQHHRAMPGLLTDDSLCAVCRNPGNKKCSRCKSVRYCSQACQQAHWKSEHKMRCKEFQSSTSAMNLAQTGLTNRGFRASAAVNGSTSSIALIPECGRGTSRPIKQPKNVLFPYDEFVKLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRRECCPNDWCFLCEFEAHVEKARLSSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFAIDAMQSVCLDEFGGEKAVPPTHQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKVYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFRGNWYRIDDWKVMSVELEEVLSQGAYMLLYSRVSARPSGLQSIESSGTAEVKTVKLEVQSGPTEQAECLSDMKTGTYSRGCEASPSDSPELKVSGCENASLTEMNSGIKREHSKDVDIIEVANEAFCNGVESSYMHDSEAVNDFGDTDMDGSNTCSSVLEEISVCMEEQDDSDMVKSSPSPCLPNGFSCSDKDSSVSVDYQNTKEDSASEHVDVIKCKVTANGFANYSNGYASANKCDVPVEDGDGSFNTETPSAEMHQLKWRLASDNSEADKGNGVKKVEMTGNKLII 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3557 742 CDD Peptidase_C19E 178 484 - -
Ssu1g3557 742 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 180 195 IPR018200 GO:0004843|GO:0006511
Ssu1g3557 742 SUPERFAMILY HIT/MYND zinc finger-like 64 107 - -
Ssu1g3557 742 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 21 676 - -
Ssu1g3557 742 ProSiteProfiles Zinc finger MYND-type profile. 66 103 IPR002893 -
Ssu1g3557 742 Gene3D - 59 109 - -
Ssu1g3557 742 SUPERFAMILY Cysteine proteinases 175 492 IPR038765 -
Ssu1g3557 742 Pfam Ubiquitin carboxyl-terminal hydrolase 179 483 IPR001394 GO:0004843|GO:0016579
Ssu1g3557 742 Gene3D Cysteine proteinases 175 494 - -
Ssu1g3557 742 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 179 486 IPR028889 -
Ssu1g3557 742 Pfam MYND finger 66 103 IPR002893 -
Ssu1g3557 742 ProSitePatterns Zinc finger MYND-type signature. 66 103 IPR002893 -
Ssu1g3557 742 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3557 Ssu-Chr1 90584801 90590717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3557 11 520 Miscellaneous Gene Families AT4G31670 63.137 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3557 K11855 - gmx:100810577 1282.32