Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3550 ATGCAACAGGTCAGGCACATGTTTGATGAGATTGATTATGTCCTAGAGGGCAAAAATGCTGAGCGCTTTGCTTCTCTCTACTGTTGGTCTGCAAGTGGGGTTAAACACAAAAGAGCAAATTCCATCAAAGCTCCAAAAATATATTGGGACTACACATGCTCTACTGTGCTGACTATGGAGTGGATAGATGGAATTAAGCTTACAGATGAAACTGGCTTGAATAAAGCTTCTTTGAACAGAAGGGAACTCATTGACCAGGGATTATACTGCTCTTTGAGGCAAATGCTTGAGGTTGGTTATTTCCATGCTGATCCTCATCCAGGAAACCTTGTTGCGAGAAATGATGGATCACTTGCATATTTTGACTTTGGAATGATGGGGGATATTCCTAGGCATTACCGGATTGGACTAATTCAAATGaTTGTGCACTTTGTTAATCGTGATTCTCTGAGCTTGGCAAATGACTTTCTTTCTTTGGGATTTATTCCTGAAGGGGTCAATATACATTCAGTTTCTGATGCGCTGCAAGCATCATTTGCTGATCGGACCAGTGAATCTCAAGATTTCCAGGGAATTATGAACCAACTATATGATGTCATGTATGAATTTAACTTCTCCCTCCCACCAGACTATGCTCTTGTGATAAGAGCATTGGGATCGCTAGAAGGCACAGCTAAAGTTCTGGATCCTGATTTTAAAGTCATTGAGAGTGCATATCCTTTTGTCATTGGGAGACTTATAGCAGACCCAAGCCCTGATATGAGAAGGATTTTGAGGGAACTTCTCATTCGTAACAATGGATCCATAAGGTGGAACCGGCTAGAACGCCTGGTAGCAGCAATATCTGAACAAGCTTCCGAGATTACTGGAGACCCTAGTTCTGAAAAGTTTTCTTCTGTTGGGAAATTATTTGACATGCACGCTGTTGTTGATTCCACTGAAGatcttttattattcatattatcaGACAAGGGTCTTAGAGTGCGTCTTTTCCTTCTTCGGGATATAGTAGAAGCAGCTGATGTGTTTCTGCAAGATGAAGTGATTGATTGCGCATTAAATGAGAATCCTCAAGGCCAGAGGACATTACTATTTGAGGAGCGTGCTATCCTCGCTAGGATTGGAAAAGGCTTTGAATACCTTTGTGGGGTGGTGAAGTTGGCGCCAGGGGAGTGGATAGCAATGCTTATTCGGATGGCAGTGAAGCCCGAGGTTCACAAATTTGCTTTAGACATTATTTCAGCTTTAGCTTTGCATTCTAGCCACAAATTACAGGTAGCTTCTTGGCTCTATTTGTCGAGACTTCTTCATAAATTGACAAATTGA 1326 0.4133 MQQVRHMFDEIDYVLEGKNAERFASLYCWSASGVKHKRANSIKAPKIYWDYTCSTVLTMEWIDGIKLTDETGLNKASLNRRELIDQGLYCSLRQMLEVGYFHADPHPGNLVARNDGSLAYFDFGMMGDIPRHYRIGLIQMIVHFVNRDSLSLANDFLSLGFIPEGVNIHSVSDALQASFADRTSESQDFQGIMNQLYDVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPDFKVIESAYPFVIGRLIADPSPDMRRILRELLIRNNGSIRWNRLERLVAAISEQASEITGDPSSEKFSSVGKLFDMHAVVDSTEDLLLFILSDKGLRVRLFLLRDIVEAADVFLQDEVIDCALNENPQGQRTLLFEERAILARIGKGFEYLCGVVKLAPGEWIAMLIRMAVKPEVHKFALDIISALALHSSHKLQVASWLYLSRLLHKLTN 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3550 441 CDD ABC1_ADCK3-like 5 156 - -
Ssu1g3550 441 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 3 429 - -
Ssu1g3550 441 Pfam ABC1 atypical kinase-like domain 5 153 IPR004147 -
Ssu1g3550 441 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 429 - -
Ssu1g3550 441 SUPERFAMILY Protein kinase-like (PK-like) 36 135 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3550 Ssu-Chr1 90407042 90414387 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3550 K08869 - gmx:100811652 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3550 1 90407042 90414387 Ssu1g3550 1 90407042 90414387 ECH