Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3543 ATGAAGATAGCGGTGGAAGGGTGCATGCACGGCGACCTGGACAATGTGTACAGAACCCTTCAACAGCTGGAGAAATCCCACAACACGAAAATCGACCTCCTCCTCTGCTGCGGCGATTTCCAAGCCGTGAGGAACGAGCATGACTTGAAGAGTTTGAACGTGCCACCGCGCTACCGCTCCATGAATTCCTTCTGGAAGCACTATTCCGGCGCAGAGGTTGCCCCCTATCCCACCATCTTCATCGGCGGCAACCACGAAGCATCCAATTATCTCTGGGAACTGTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCCGGGGTGGTGAGGTTTGGGAATGTCCGAATTGGTGGCCTCTCTGGGATTTACAATGGTCGTCACTATAAATtagGACACTTTGAGAGGCCTCCCTATGATCAGAGTACCATTAGGTCTGTGTATCATGTTCGCGAATATGATGTTAGCAAACTAATGCAAGTCAAGGAACCCATTGATGTTTTTCTTTCGCATGATTGGCCCGTGAGGATCACTGATTATGGTGATTGGAAGGAGCTTGTTCGGCGCAAGCATTTTTTCAAGCAAGAGATAGAGGAAAAAAGACTAGGGAGTAAAGCTGCTGCTGAACTTCTAGAAAAACTGAAACCACATTATTGGTTTTCAGCTCACCTACACTGCAAGTTTGCTGCTCTTGTTCAACATGGGGAAGGAGGTCCGCTGACAAAATTCCTTGCACTGGATAAATGTATTGCTGGGCGTGATTTCTTACAGATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTATGACGAAGAATGGTTAGCAATAACACGGATGTTCAACCCTATCTTCCCTTTGACCACCAAAGGTGCAGACTTCAGAGGTGTAAATCTTGAGATGGAAGATTGTCTTGAATGGGTTAGAAGCAGGCTACGAGGGAGGGGGTGCAAACCTTTTGAATATGTTAGAACAGCTCCGTGTTATGACCCTTCACGATCCAATTTTGATGGTGCTTTTGCTgTGAATCCCCGAAATCCTCAGACAGAATCTTTTTTGCAGCTTCTGGAACTTCCATATCTTCTTGATAGCAATCCTGAAGCAAAGGACTTCTCACTTTATCCTTCTCCTTCAATTCAAAGAGGCATTGGTTATGACAGCGAGGACATTCCCATTGATGATGTGGATGATAATGATGAGGAGCTCCTAAAAGTTGAGAACGTGGAAGCTGAGACTTCAAATTTGTAA 1263 0.4561 MKIAVEGCMHGDLDNVYRTLQQLEKSHNTKIDLLLCCGDFQAVRNEHDLKSLNVPPRYRSMNSFWKHYSGAEVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGAAGVVRFGNVRIGGLSGIYNGRHYKLGHFERPPYDQSTIRSVYHVREYDVSKLMQVKEPIDVFLSHDWPVRITDYGDWKELVRRKHFFKQEIEEKRLGSKAAAELLEKLKPHYWFSAHLHCKFAALVQHGEGGPLTKFLALDKCIAGRDFLQIVEIESDAGPYEIQYDEEWLAITRMFNPIFPLTTKGADFRGVNLEMEDCLEWVRSRLRGRGCKPFEYVRTAPCYDPSRSNFDGAFAVNPRNPQTESFLQLLELPYLLDSNPEAKDFSLYPSPSIQRGIGYDSEDIPIDDVDDNDEELLKVENVEAETSNL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3543 420 Gene3D - 7 248 IPR029052 -
Ssu1g3543 420 Pfam Lariat debranching enzyme, C-terminal domain 244 364 IPR007708 GO:0006397|GO:0016788
Ssu1g3543 420 PANTHER RNA LARIAT DEBRANCHING ENZYME 1 400 - -
Ssu1g3543 420 CDD MPP_Dbr1_N 3 259 IPR041816 -
Ssu1g3543 420 SUPERFAMILY Metallo-dependent phosphatases 1 242 IPR029052 -
Ssu1g3543 420 SMART DBR1_2 235 367 IPR007708 GO:0006397|GO:0016788
Ssu1g3543 420 Pfam Calcineurin-like phosphoesterase 1 229 IPR004843 GO:0016787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3543 K18328 - gmx:100812726 781.171