Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3528 ATGTTCACGTTGACTCCATCGAAAGTCAACTGGGGTAATAGCTGTATTGCACTAGCCACTAAACAGTTTAACAAACCAAATTATGATACAAACTTTTGCTTTTTGCTTGCCGTATGTTATCTCAGTCAGTATAGAATCATGAGACACACTCCGAGGATTGGTGTCCACTGTGTCTTTGTGTGTTACATTATATTGGTGTTGTTGAGCAGTGTTTGTGAATCAACTTCATCCTCTTCCCACTGTAAAGCATGGTTAGTGCAATCCACCCCCACCAATATGCCCCACCTATCCCATGTTCCTGGCATCCTCTCTACTGGGGATGTGCTTCGGTGGCTGGCTGCAAACTCCACCACGAGGCTACACATAATTGCTCAGTACTGGCAGCTGCTACCTTCTCCTAACGATCCTCGCTCTGGGGACTATGGTTACACTCAACATCAGATGCATGAATTTGGAGCCCATCAAGGTGTTGCCCTTTATCAAGCATTAGATGCTGCTGCTGACCGTAATGTTAGCATCAGGTTACTGTCCCACTCTGGAGTGTATCCAACGTTTACCTTAGAACCATCCAAACTTGCTTCCGGAAGGCCAAATGTTGAGAATGTCACATTGCTACTAGAGGATTGGTGGGGCTCGGGCATTGTCCATGCCAAAGTTTGGATATCCAATAGCAGGGATGTGTATATTGGATCGGCAAACAATGACTGGAAATCTCTTACGCAGGTCAAGGAACTCGGAATTTATTTTGCTGATTGTCCTGAAATAGCTGGAAAGGTTGAGGTCTACTTTGACAATTTATGGACACTTGCATCTCTTAATTCTTCAGCTTACACAAAAGCAGTGTTTGATCAAGAGTGGCAAGTTGAGAGAAAGGTTCCTTGCTGGTCGCATTTCGTTGATCCTAGAGAGAGGTGCAAGTCACCTCTTCCTCAATACCTGGAGACTCCTCATGCTGCAGGATATCCTATTCTGTCTGACCCTTGTTTGTTTGAGGTTTCATTTCAAACTCCTGGGAGTAACTATTCAGCAAAGCAGCCCCAAGTCAGCTATCTATCCTTTGCACCCCCAGAGCTATTATTTGGCAAATATCAGGCTGATGAGCAGGCATGGATTGACACAATTAAGTCTGTTGGAAAGAGGAAGACAGTTAGAATCAGTACCATGGACTGGCTAGGTCAGTCACAATTTATGGACCAAACAATTTACTGGTCATCCCTATCCTCTGCAATATCACAGGTGGTGTTTTCCAAGAATGCAACAGTGCAGATACTGGTGGCATATTGGGCACACTTCATCAACAACACAGATGTGTACCTAAAGTCTCTCCTCTACACCAACAATCTCTGCGCTTCCTCAAAGTACAACAAATGCTCTGGGAAAGTtgagataaaatattatgtggTTCCAGGTTTCAACATGACAGGACCTGCCATTCAGGGTGGAACTAGAACAGGAAACATATACCCTGGTTTTACAAGAGTCAATCATGGAAAATATGCAGTTAGTGATGTAAGGGCACACATTGGGACTAGCAATCTTGTATGGGACTACTTCTACACAACAGCAGGTGTCAGCTTTGGGACATGCAACAATGCCATCATCTCTCAACTTAGGGAAATTTTTAATGCTGATTGGAACTCACCCTATGCTGTTCCATTTGAAGAGATGGAGAAAGGTTATACAAAAAGTtcaatctaa 1698 0.4329 MFTLTPSKVNWGNSCIALATKQFNKPNYDTNFCFLLAVCYLSQYRIMRHTPRIGVHCVFVCYIILVLLSSVCESTSSSSHCKAWLVQSTPTNMPHLSHVPGILSTGDVLRWLAANSTTRLHIIAQYWQLLPSPNDPRSGDYGYTQHQMHEFGAHQGVALYQALDAAADRNVSIRLLSHSGVYPTFTLEPSKLASGRPNVENVTLLLEDWWGSGIVHAKVWISNSRDVYIGSANNDWKSLTQVKELGIYFADCPEIAGKVEVYFDNLWTLASLNSSAYTKAVFDQEWQVERKVPCWSHFVDPRERCKSPLPQYLETPHAAGYPILSDPCLFEVSFQTPGSNYSAKQPQVSYLSFAPPELLFGKYQADEQAWIDTIKSVGKRKTVRISTMDWLGQSQFMDQTIYWSSLSSAISQVVFSKNATVQILVAYWAHFINNTDVYLKSLLYTNNLCASSKYNKCSGKVEIKYYVVPGFNMTGPAIQGGTRTGNIYPGFTRVNHGKYAVSDVRAHIGTSNLVWDYFYTTAGVSFGTCNNAIISQLREIFNADWNSPYAVPFEEMEKGYTKSSI 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3528 565 Pfam PLD-like domain 156 267 IPR025202 -
Ssu1g3528 565 PANTHER PHOSPHOLIPASE D - RELATED 60 557 - -
Ssu1g3528 565 CDD PLDc_vPLD3_4_5_like_1 85 252 - -
Ssu1g3528 565 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 211 238 IPR001736 GO:0003824
Ssu1g3528 565 Gene3D Endonuclease Chain A 105 271 - -
Ssu1g3528 565 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 491 517 IPR001736 GO:0003824
Ssu1g3528 565 PANTHER GM01519P-RELATED 60 557 - -
Ssu1g3528 565 CDD PLDc_vPLD3_4_5_like_2 350 546 - -
Ssu1g3528 565 SUPERFAMILY Phospholipase D/nuclease 111 269 - -
Ssu1g3528 565 SMART pld_4 491 517 IPR001736 GO:0003824
Ssu1g3528 565 SMART pld_4 211 238 IPR001736 GO:0003824
Ssu1g3528 565 Gene3D Endonuclease Chain A 344 548 - -
Ssu1g3528 565 SUPERFAMILY Phospholipase D/nuclease 347 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3528 Ssu-Chr1 90202633 90206660 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3528 K16860 - gmx:100778897 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3528 1 90202633 90206660 Ssu1g3528 1 90202633 90206660 ECH