Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3527 ATGGGTCACGTGGGTTCCAGCAAGGCGGGGGTGTCGGCGATGGACATCGACGAGGACGAGGACAATGAGGAGCTTGACCTCGGAGACGGTCTGGACCCGAGCAACGCGGAAATCCTGGAAGAACTGGGAGAAGACATGGTGCGGTATGTGTGCAAGAAGGCGTCGATGTTGTTGTTGGAGGAGTACGGTCTGATCAGTCACCAGATCAAGTCGTACAACCACTTCGTCCACATTGGCCTTCAGAAAACCTTCGACTCCTTCGGCGACCTCCTTGTCACGCCCGGCTTCGATCCTTCCAAGAAGGGAGACAACGAACACTACCGTTACGCCTCCGTCAAGTTCGGCAAGGTCAAACTCGATAAACCCAAGTTCTGGGGCGGTGAAGGCAACGCCCACGAGTTTAAGATGCTTCCCAGACACGCTAGACTTCAGAGGATGACCTACGCTTCCAAAATCAAAATCGAAATTCAAGTTCAGGTGTATGTTCCGAGGAAGGTTCGAAGTGATAAGTTCAAGACTGGTAAAGAAGAGTTCCTTGACAGAGAGATTCTGAAGGAAGACCAAAGGGAAATCATAATTGGGAGATTGCCCGTCATGGTCAAGTCTGATTTATGCTGGATGAAAGAAGCTGAAAAGGATGATTGTGAATTTGATCGTGGAGGCTACTTTCTCATTAAGGGTGCAGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTGAAGAGGCTATGGATTATAAATAATCCAGGTTGGATGATTGCCTACAAGTCACAGATGAAGAGAAATAGGATGCTTATTAAATTGGTAGGCAATTCCAAGAATGAAGAAGTGAACAATGGAGACATGTGTCTTAGTGTATATTTTTTGTCTGTTGAGGTGCCTGTGTGGGTATTGTTTTTTGCTCTTGGTATCTCGTCTGACAAAGAGGTTGTAGATCTCATTGGTTGTGGCAATGATGGTGCTAGAATTCAGAACATTCTCTTTGCGTCAATCCGTGATGCTGATGAAAAATGTGCAACATTTCGTAGAGGTAGGAGTGCACTTCTATATTTAGATAAATGTGTAAAAGGTGTCCAATTTCCACCCTCGGAGTCTATTCAGGAGTGTCTCGAATTGTATGTCTTTCCTGCAATTAGCGGTTTAAATAGAAAGGCACGCTTCCTTGCGTATATGGTGAAGGGTCTCTTGTTGGCTTATACTGGCCGCAGAAAATGTGATAACAGGGatgattttagaaataaaaggcTTGAATTGGCCAGTGAGCTGCTTGACCGGGAGTTGAAAGTGCACATTGCACATGCTCGGAAACGAATGGCAAAGGCTTTGCAGAGAGACCTTTATGGAGATCGTGATGTACGCCCAATTGAGCATTATCTAGATGCATCAATAATTACAAATGGTTTGCAAAGAGCATTTTCAACGGGAGCGTGGTCACATCCATATAAGAGGATGGAAAGGATCTCGGGTGTGGTTGCAAATGTTGGGCGCACTAATCCATTACAAACCATGGCCGAGTTAAGAAGAACCAGGCAGCAGGTCCAGTACACGGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTTCTCTCTACCCCGGATGGTGAAAATTGTGGACTAGTAAAAAATTTGGCTGTCACAGGACTAGTAAGCACTGATGTATCTGATGCATCTGAATCTATACTGCCCAAATTGTTGGATTGTGGAGTGGAAGAACTTGTCAATGATACTTCCACTCATCTGGGCAACAAGGACAAAGTCTTCTTAAATGGTGATTGGATTGGAGTGTGTCCTGATTCCCATTCGTTTGTAGCGGAGCTCCGAAGTAAAAGACGTAGAAATGAACTGCCTCATGAGGTGGAAATCAAGAGAGATCAATCTCAACATGAAGTGCGCATATACTCTGATGCAGGAAGGATTCTACGTCCTCTTTTGGTAGTTGGGAATCTACTAAAGATTAAAGGATTTAAATCAGACCGTTACTCTTTCCGGTCTCTATTGGATAAAGGTGTGATTGAGCTGATTGGACCTGAAGAAGAGGAAGACTGCTGTACTGCCTGGGGTGTTCAGTATTTATTTGCAAAAGAGGGAAAACATTCTGTAAAGTACACCCACTGTGAACTTGATATGTCGTTCTTATTGGGTTTAAGCTGTTCACTTGTACCATTTGCTAATCATGACCATGCAAGGAGGGTACTCTACCAGTCTCAAAAGCACTCCTCACAGGCTATTGGCTTTTCTACCACAAACCCAGACATTAGAGTTGATACATTGTCTCACCAGTTACAGTATCCCCAAAGGCCCCTTTTTCAAACAATGACTTCAGATTGTCTTGGAAAACCAGCCTATCCACTGGGTCAgagtaaaataagtaaaataccTCCCAAGGCAGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTACATCTGGGATACAATCAAGAGGATTCCCTGGTGATGAACCTTGCTTCGTTGCAGCGTGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAATCTGAAATCGAAAATAAGGAATCTTCGGAGAAGAAGCGAAAACCTGAAGACACTGTAAATTTTGGAAAGGTACAGAGTAAAATTGGTCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGGGCAAACTTGCAAAGTGGTGATATTATTATTGGGCGGTGTGCTGAGTCCGGTGCAGACAATAGTGTGAAGTTAAAACACACTGAAAGGGGTTATGTGCAAAAGGTTGTGCTGTCTTCAAATGACGAGGGGAAAAATTTTGCTGTCGTTTCATTAAGACAGGTTCGAAGTCCAGTTCTTGGAGACAAGTTCTCCAGTATGCACGGACAAAAGGGAGTTTTGGGATTTCTGGAGGCTCAGGAAAATTTTCCTTTCACAAGACAAGGTATTGTTCCTGATATTGTCATAAATCCGCACGCATTTCCGTCACGACAAACTCCTGGGCAACTCCTGGAGGCTGCTTTAGGAAAGGGTATTGCTTGTGGTGGTTTACTGAGACATGCTACGCCTTTCTCCACTCCTTCTGTTGATGCCATTACCGACCAGCTTCACAGAGCCGGGTTTTCAAGATGGGGGAATGAGAGGGTATACAATGGGAGGACTGGTGAGATGGTCCGATCACTAATTTTTATGGGACCAACGTTTTACCAACGTCTGCATCATATGTCTGAAGACAAAGTGAAATTCCGGAACACCGGTCCAGTTCACCCGTTGACCCGACAGCCTGTAGCTGACAGAAAACGATTTGGAGGTATCAAGTTTGGTGAAATGGAGCGTGATTGTCTGATAGCTCATGGTGCATCTGCCAACCTCTATGAACGCCTCTTTACACTAAGTGACTCCTCTCAGATTCACATCTGCAGCAAATGCAAAAATGTTGCAAATGTGATCTTGCGGCCAGTCTCTGGTGGGCGGAAAATTCGAGGACCTTATTGCCGCTACTGTGAATCTGCGGATGACATTGTGGTGGCCAATGTCCCGTATGGAGCAAAATTATTATGCCAGGAGCTCTTTAGCATGGGcataaatcttaaatttgaAACCCAACCTTGCTAG 3606 0.4423 MGHVGSSKAGVSAMDIDEDEDNEELDLGDGLDPSNAEILEELGEDMVRYVCKKASMLLLEEYGLISHQIKSYNHFVHIGLQKTFDSFGDLLVTPGFDPSKKGDNEHYRYASVKFGKVKLDKPKFWGGEGNAHEFKMLPRHARLQRMTYASKIKIEIQVQVYVPRKVRSDKFKTGKEEFLDREILKEDQREIIIGRLPVMVKSDLCWMKEAEKDDCEFDRGGYFLIKGAEKTFIAQEQLYLKRLWIINNPGWMIAYKSQMKRNRMLIKLVGNSKNEEVNNGDMCLSVYFLSVEVPVWVLFFALGISSDKEVVDLIGCGNDGARIQNILFASIRDADEKCATFRRGRSALLYLDKCVKGVQFPPSESIQECLELYVFPAISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDVSDASESILPKLLDCGVEELVNDTSTHLGNKDKVFLNGDWIGVCPDSHSFVAELRSKRRRNELPHEVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFRSLLDKGVIELIGPEEEEDCCTAWGVQYLFAKEGKHSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIRVDTLSHQLQYPQRPLFQTMTSDCLGKPAYPLGQSKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNLASLQRGMFRSEHIRSYKSEIENKESSEKKRKPEDTVNFGKVQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLEAQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTPSVDAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRYCESADDIVVANVPYGAKLLCQELFSMGINLKFETQPC 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3527 1201 Pfam RNA polymerase Rpb2, domain 2 262 417 IPR007642 GO:0003677|GO:0003899|GO:0006351
Ssu1g3527 1201 ProSitePatterns RNA polymerases beta chain signature. 951 963 IPR007121 GO:0003677|GO:0003899|GO:0006351
Ssu1g3527 1201 Pfam RNA polymerase Rpb2, domain 4 593 653 IPR007646 GO:0003677|GO:0003899|GO:0006351
Ssu1g3527 1201 Gene3D RNA polymerase alpha subunit dimerisation domain 1085 1199 - -
Ssu1g3527 1201 Gene3D - 755 947 IPR014724 GO:0003899
Ssu1g3527 1201 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 33 1198 - -
Ssu1g3527 1201 Pfam RNA polymerase beta subunit 63 454 IPR007644 GO:0003677|GO:0003899|GO:0006351
Ssu1g3527 1201 Pfam RNA polymerase Rpb2, domain 7 1100 1198 IPR007641 GO:0003677|GO:0003899|GO:0006351
Ssu1g3527 1201 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 33 1198 IPR015712 GO:0003899|GO:0006351|GO:0032549
Ssu1g3527 1201 Pfam RNA polymerase Rpb2, domain 3 496 553 IPR007645 GO:0003677|GO:0003899|GO:0006351
Ssu1g3527 1201 CDD RNA_pol_B_RPB2 64 1197 IPR015712 GO:0003899|GO:0006351|GO:0032549
Ssu1g3527 1201 Pfam RNA polymerase Rpb2, domain 6 724 1098 IPR007120 GO:0003677|GO:0003899|GO:0006351
Ssu1g3527 1201 Pfam RNA polymerase Rpb2, domain 5 669 715 IPR007647 GO:0006351
Ssu1g3527 1201 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 52 1198 - -
Ssu1g3527 1201 Gene3D RNA polymerase Rpb2, domain 2 249 405 IPR037034 GO:0003677|GO:0003899|GO:0006351
Ssu1g3527 1201 Gene3D - 725 1084 IPR037033 GO:0003677|GO:0003899|GO:0006351
Ssu1g3527 1201 Gene3D - 58 239 - -
Ssu1g3527 1201 Gene3D - 406 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3527 Ssu-Chr1 90194621 90200779 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3527 - K16252 gmx:100779425 2200.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3527 1 90194621 90200779 Ssu1g3527 1 90194621 90200779 ECH