Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3519 ATGGCGTCTACCGATAAAGAATTGGAAGAGCAGCTTCTCGAAGCCGGTAACAAGCTTGTAGATCCTCCGTCGTCAGTGGAGGAGCTCCTCCCTCTCCTAGACCGAGTTGAGAGTTGCCTATCAAGGGTTGAACAGTCACCTACCGACTCTATGCAAAATGCTCTCTCTCCATCATTGAAAGCATTGATTGCAGACAAACTTTTAGGGCACCCAGATGATGATGTCAAAGTTGCAGTTGCCTCTTGCATTAGTGAAATAACAAGAATCACTGCACCTGAAGCTCCTTATAATGATGATCAAATGAAGGAGGTCTTTCAATTAATAGTATCTTCATTTGAAAATCTACATGATAAGTTAAGCCGATCATATGCTAAGAGGACCTCAATTCTTGAAACTGTTGCGAAAGTCAGATCATGTGTGGTAATGCTAGACCTTGAATGTGATGCCCTGATTTTGGAGATGTTTCAGCATTTCTTAAAAGCAATAAGGGAACATCATCCAGAAAATGTTTTTACATCCATGGAAACAATTATGACCCTTGTTCTAGAGGAAAGTGAAGATATATCCTTAGACCTGCTGTCTCCACTCCTGGACAGCATTAAGAAAGACAATGAGGAAGTTTTTTCAATTGCCCAAAAATTGGGGGAGAGGGTCCTTGAAAGTTGTGCAACCAAGCTTAAACCCTACTTGGTTCAAGCAGTGAAATCCTTGGGTATATCTGTGGATGATTATAGTACGGTACTTGCTTCAATATGCCAAGATACATCTGATGACTTGGAGAAAAATGATACATGTGTTACTAGCGAGCATGTGGAAGATAAGAGTGAGTCAGCAAAACAATCACTGGAGGAGTCAACACATGTGGTTAAAAAGGATTCAAGGGAAGTTACATCCTCTCAACAAGATAATCCTGATGTGAATAGATCTCCAAAGTCGGTCATGAGTAATGGTGTTGCATGTGTTGGAGAAGATAATGCTTTAGCTGATTCCAAGTCCATTAAAAAGCAAGAGGATGCTGATTGTTCTAATCACTCTGAAGGTTTGAATGTATCTGGTCATGAGGTGCTTAATGATTTGGAAACTGAAAAGGTTGACAATAGTGAACAAAGGCCAGAACAGGCTACCAAGAGACGACAAAGGAAATCAAGCTCTTCAACTAAATCAGCAAAACCTTCCAAGGGTCAAATTGCTGCTAAGGAGAAGGAAGCTGAGAAAATACTCGACTATGAAAGTGACAGCAAGAAAGTTCCCAGTTCCCCTCATGAGGACCATTCTGTTGAAGCAGCAGGACCTTCAGAGAATGACAAACCTTCAGAGAACGACAAAGAAATTGATGCTAAGATTTCATCACCAAAGGCTTGCAACGACGAATCTGCAGTTGTTCCTTCTCCACCAAGTGAGAGCCTCTATGATGAAAATCATTCGAAGAAACTTGGACGGGCAAAAAAGAAGGGTGGTCCTGTAAAAGAAGGGGCTGCCGAGGATGTTTCAAAGGTGTTTGGAGGAGCTAGTGATTCAGAAGCCAAACCTTCCAGGCGGTCAGTGAAAAAGGCACTTGGTCAAAACTCTGATGTGAAAAAAACTAGTGTGGTAGATTCAGTAAAAAAGGGAAGTGGGGCTGCAAATGATGCAGATGCTAAAAAGCATTCAGCCAAGAAATTAGATGAAAACAAAAAGGGTAGTGGTGGATCCTCTTCAAGGAAGATGGAGGACAAGAAAAAGGGAGGGCGGGTAAAAGCTAACTCTGAAACAGATGTAGCAAAATCATCTGCTATAGATGTGGACAAGgAATCATTGTTAATTATTTGGGAAATGGTTTCTTCTCCAAAGTCTGGTGCAAAATCAACTAAAGATGAAAATTCAGAGGAGACTCCCACGACAAATGTGAAAAGGAAACGCACTTcaggaaaagaaaatGAGTCTGATATGAAGGAATATGGTGAAAACCTTGTTGGTTTGCGGGTCAAAGTTTGGTGGCCTAAGGATCGTGAGTTTTACAAAGGTGTTGTTCATTCTTTTGATTCTGCCAAAAAGAAGCACAAGGTTTTGTATGATGATGGTGATCaagaaatattaaatcttaCAAAGGAAAAATGGAAGGTCATTGAAGCTGACTCAGATGCAGATGGGGAAGAAGGAACTGATCGTGCAAGTCTTGATGCTTCCACTGATATGCCACCAAAGAAGAAAGGGAAAACAAGTGCTGGTGAATCAAACAAGCAGGGAAAGATGGAGGCTTCTTCCAGAAGTGGTGGAGCAGCAGCATCCAGTAGATCAAAGGGTGTATCCATGAAGTCTAACCGCAAGTCCAAAGATGGCAACAAATCCAAAGATTCCAAGACTATTAGCAAATCTGAGGATGAAGTTAGTAGAAAAACTAAGGACAGCACTGCTAAAAGTGGTAGCAGTAAATCTATTGTTGCTGctaaaaaaatgagtaataaattcaaaaacacTGATACTTCCAAGACAAGCGAATCAAAGGATGATGACACGAGCACACCAAAATCCTCTGCCAAGTCTAAGCAAGAAACTCCAAAAAGTGGAAAATCCAAGCAAGAAACCCCTAAGACTTCCATTTCCAAAGGAAAACCTCTCAAAAGTGGTGGAAAGACTGATGTTAATGGTACTGGCAAGGTGAAATCTGGTTTATCGAAGAGAAAAGATTCCGAGAATGAGAACTCAGATGTTTCAGCAGAAGAGGTAGAAGATGCCAAGGGTAAGACTTCAAGTTCATCAAAGGCACAGGGAAGTGAGCCCAAGAGTGGAAAGAAGCGTCGGAGAAGCTAG 2790 0.4079 MASTDKELEEQLLEAGNKLVDPPSSVEELLPLLDRVESCLSRVEQSPTDSMQNALSPSLKALIADKLLGHPDDDVKVAVASCISEITRITAPEAPYNDDQMKEVFQLIVSSFENLHDKLSRSYAKRTSILETVAKVRSCVVMLDLECDALILEMFQHFLKAIREHHPENVFTSMETIMTLVLEESEDISLDLLSPLLDSIKKDNEEVFSIAQKLGERVLESCATKLKPYLVQAVKSLGISVDDYSTVLASICQDTSDDLEKNDTCVTSEHVEDKSESAKQSLEESTHVVKKDSREVTSSQQDNPDVNRSPKSVMSNGVACVGEDNALADSKSIKKQEDADCSNHSEGLNVSGHEVLNDLETEKVDNSEQRPEQATKRRQRKSSSSTKSAKPSKGQIAAKEKEAEKILDYESDSKKVPSSPHEDHSVEAAGPSENDKPSENDKEIDAKISSPKACNDESAVVPSPPSESLYDENHSKKLGRAKKKGGPVKEGAAEDVSKVFGGASDSEAKPSRRSVKKALGQNSDVKKTSVVDSVKKGSGAANDADAKKHSAKKLDENKKGSGGSSSRKMEDKKKGGRVKANSETDVAKSSAIDVDKESLLIIWEMVSSPKSGAKSTKDENSEETPTTNVKRKRTSGKENESDMKEYGENLVGLRVKVWWPKDREFYKGVVHSFDSAKKKHKVLYDDGDQEILNLTKEKWKVIEADSDADGEEGTDRASLDASTDMPPKKKGKTSAGESNKQGKMEASSRSGGAAASSRSKGVSMKSNRKSKDGNKSKDSKTISKSEDEVSRKTKDSTAKSGSSKSIVAAKKMSNKFKNTDTSKTSESKDDDTSTPKSSAKSKQETPKSGKSKQETPKTSISKGKPLKSGGKTDVNGTGKVKSGLSKRKDSENENSDVSAEEVEDAKGKTSSSSKAQGSEPKSGKKRRRS 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3519 929 MobiDBLite consensus disorder prediction 702 929 - -
Ssu1g3519 929 Pfam Sister chromatid cohesion protein PDS5 protein 28 233 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 541 581 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 615 643 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 299 314 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 470 491 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 356 379 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 799 820 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 394 450 - -
Ssu1g3519 929 CDD TUDOR 652 696 IPR002999 -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 609 643 - -
Ssu1g3519 929 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 2 896 IPR039776 GO:0007064
Ssu1g3519 929 SUPERFAMILY ARM repeat 38 247 IPR016024 -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 266 316 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 821 851 - -
Ssu1g3519 929 PANTHER TRANSCRIPTIONAL REGULATOR 2 896 - -
Ssu1g3519 929 SUPERFAMILY Tudor/PWWP/MBT 649 689 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 882 908 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 702 736 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 266 298 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 737 763 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 331 590 - -
Ssu1g3519 929 Gene3D - 647 695 - -
Ssu1g3519 929 MobiDBLite consensus disorder prediction 765 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3519 Ssu-Chr1 89964349 89973125 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3519 - - gmx:100809147 1372.07