Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3516 ATGTATCATGCAGCTGAACTCATCCGGCTCTCGAAGCACATCGCAACCCCGGAATCCCTCCTCCGCTTCCACGCGGTGACCGTGACGAGCGGGCACTCCACTAACCTCTTCATCGCCTCAAAGCTGATATCTCTGTACGACTCTCACAACGACGACCCCACTTCGTGTTCCACCCTCTTCCACTCTCTCCCCTCCAAAGACACCTTCCTCTATAACTCCCTCCTCAAATCCCTCTTCTCCCGCTCCCTCTTCCCCCAGCTCCTCTCCCTCTTCTCCCACATGCGCGCCTCCAACCTCTCCCCCGACCACTTCACCCTCCCCCTCGTCGTTTCCGCCTCCGCGCACCTTACGCTCCTCCCTCACGGCGCGTCCGTCCACGCCCTCGCGTCCAAAACCGgcctcttctcttcttcctcggCGTCCGCTTCCTTTGTGTCCCTCTACTCGCGGTGTGGCCAAATGGACCTTGCACGCAAGGTGTTCGATGAAATTCCCGTTAGGGACGTGGTTGCTTGGACTGCTCTTATCATTGGGCACGTGCAGAATGGGGAACCTGAGAAGGGTTTGAGGTGTCTCCGTTACATGCATGGGGTCGGTGAGGATGCTGAGAAGCCCAACGCTAGAACGTGGGAGGGTGGGTTTCTCGCGTGTGGGAATCTTTGTGCTTTGAAAGAAGGCACGTGTTTGCATGGGGTGGTTATCAAAAACGGGGTTGCTTCTTTTATACAGTCTTCGGTTTTGGCTATGTATTCCAAATGTGGGAACCCACGAGAAGCGTATCGAGCCTTTTGTGACGTGATCCACAAAGATCTTCTGTGTTGGACGTCCATCATTGGGGTTTGTGCGAGGTTTGGGATGATGGGGGAGTGTGTGAGGTTGTTTAGGGAAATGCAGGAACACGGAATACGCCCAGATGGGATTGTTATTGGTTGCATGCTTTCGGGTTTTGGTAATTCCATGGATGTGTCTGAAGGGAAGGCGTTTCATGGAGTGATTATAAGGAGACATTATGTGGATGATGAGAAAGTTAATGATTCGCTGTTGTTTATGTACCTCAAGTTTGGAATGTTAAGTGTGGCGGAGAGGCTTTTCCCTCGGTGTCGAGGGAGCGGAGATTGCTGGAACTTTATGGTTTTTGGGTATGGTAGAATAGGCGAGGACGTGAAGTGTGTTGAGCTCTTCAGGGAGATGCAGATTTTAGGTATTCGTTCTGAATCAATTGGGGTGGTTTCAGCAATTGCCTCGTGTGCTCAGTTAGGAGCAGTTAATTTGGGTAGGTCGATTCATTGCAATGTGATAAAGGGTTTTTTGGATGGTAACATCTCAGTCACCAACTCGCTCATAGAGATGTATGGAAAATGTGGTAAGCTGACATTTGCTTGGAGAATATTTGATAGGTCGGAGAGGGATGTTGTATCATGGAACATTCTGATTTCGTCTCATGTTCACTTCAAGCAGCATGAGGAGgctgtaaatttatttaataaaatggttAGGGAAGACCAGAAGCCCAATACAGCCACGCTTGTGGTAGTGCTTTCCGCTTGTTCTCACCTTGCATCtctagagaaaggagaaagagttCACCGCTACATAAATGAAAGTGGTTTTCAACTTAATTTACCTCTTGGCACAACGTTGGTTGATGTGTATGCCAAGTGTGGGCAGCTACAAAAATCAAGAATGGTGTTTGACTCTATGATGGAGAAGGATGTAATTTGCTGGAATGCAATGATTTCAGGTTATGGAATGAATGGATATGCAGAATCTGCTTTGGAGATATTCCAACATATGGAGGAATCAAATGTTATGCCCAATGAAATTACcttcctctctcttctctcagcATGTGCCCATGCAGGGCTTGTTGAAGAAGGGAAATATGTGTTTGCGAGAATGTTGAGTTATTCTGTGAATCCCAATTTAAAGCACTACACTTGTATGGTAGATCTTTTGGGAAGGTCAGGTAATCTACAAGAAGCAGAAGATATGGTCTTATCCATGCCCATTTCTCCAGACGGCGGTGTTTGGGGAGCTTTGTTAAGTCATTGTAAAACTTACAATCAAGTTGAGATGGGAATAAGAATTGCAATGTATGCTATTGACTCTGAACCAGAAAATGACGGCTACTATATAATGATGGCCAATATGTATAGCTCCATTGGGAGGTGGGAAGAAGCAGAAAATGTGAGAAGGACAATGAAAGAGAGGTGTTCAATGGGAAAGAAAGCTGGCTGGAGTCTGCTCTGA 2250 0.4578 MYHAAELIRLSKHIATPESLLRFHAVTVTSGHSTNLFIASKLISLYDSHNDDPTSCSTLFHSLPSKDTFLYNSLLKSLFSRSLFPQLLSLFSHMRASNLSPDHFTLPLVVSASAHLTLLPHGASVHALASKTGLFSSSSASASFVSLYSRCGQMDLARKVFDEIPVRDVVAWTALIIGHVQNGEPEKGLRCLRYMHGVGEDAEKPNARTWEGGFLACGNLCALKEGTCLHGVVIKNGVASFIQSSVLAMYSKCGNPREAYRAFCDVIHKDLLCWTSIIGVCARFGMMGECVRLFREMQEHGIRPDGIVIGCMLSGFGNSMDVSEGKAFHGVIIRRHYVDDEKVNDSLLFMYLKFGMLSVAERLFPRCRGSGDCWNFMVFGYGRIGEDVKCVELFREMQILGIRSESIGVVSAIASCAQLGAVNLGRSIHCNVIKGFLDGNISVTNSLIEMYGKCGKLTFAWRIFDRSERDVVSWNILISSHVHFKQHEEAVNLFNKMVREDQKPNTATLVVVLSACSHLASLEKGERVHRYINESGFQLNLPLGTTLVDVYAKCGQLQKSRMVFDSMMEKDVICWNAMISGYGMNGYAESALEIFQHMEESNVMPNEITFLSLLSACAHAGLVEEGKYVFARMLSYSVNPNLKHYTCMVDLLGRSGNLQEAEDMVLSMPISPDGGVWGALLSHCKTYNQVEMGIRIAMYAIDSEPENDGYYIMMANMYSSIGRWEEAENVRRTMKERCSMGKKAGWSLL 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3516 749 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Ssu1g3516 749 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Ssu1g3516 749 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Ssu1g3516 749 Pfam E motif 687 745 IPR046848 -
Ssu1g3516 749 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Ssu1g3516 749 Pfam PPR repeat 144 166 IPR002885 -
Ssu1g3516 749 Pfam PPR repeat 445 466 IPR002885 -
Ssu1g3516 749 Pfam PPR repeat 273 302 IPR002885 -
Ssu1g3516 749 Pfam PPR repeat 373 402 IPR002885 -
Ssu1g3516 749 Pfam PPR repeat 644 668 IPR002885 -
Ssu1g3516 749 Pfam PPR repeat 170 197 IPR002885 -
Ssu1g3516 749 Gene3D Tetratricopeptide repeat domain 377 543 IPR011990 GO:0005515
Ssu1g3516 749 Gene3D Tetratricopeptide repeat domain 229 376 IPR011990 GO:0005515
Ssu1g3516 749 Gene3D Tetratricopeptide repeat domain 546 747 IPR011990 GO:0005515
Ssu1g3516 749 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Ssu1g3516 749 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 424 748 - -
Ssu1g3516 749 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 422 - -
Ssu1g3516 749 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 373 525 - -
Ssu1g3516 749 SUPERFAMILY TPR-like 473 728 IPR011990 GO:0005515
Ssu1g3516 749 TIGRFAM PPR: pentatricopeptide repeat domain 573 607 IPR002885 -
Ssu1g3516 749 TIGRFAM PPR: pentatricopeptide repeat domain 273 305 IPR002885 -
Ssu1g3516 749 TIGRFAM PPR: pentatricopeptide repeat domain 608 641 IPR002885 -
Ssu1g3516 749 TIGRFAM PPR: pentatricopeptide repeat domain 545 572 IPR002885 -
Ssu1g3516 749 TIGRFAM PPR: pentatricopeptide repeat domain 472 506 IPR002885 -
Ssu1g3516 749 TIGRFAM PPR: pentatricopeptide repeat domain 170 196 IPR002885 -
Ssu1g3516 749 Pfam PPR repeat family 570 618 IPR002885 -
Ssu1g3516 749 Pfam PPR repeat family 469 517 IPR002885 -
Ssu1g3516 749 Gene3D Tetratricopeptide repeat domain 124 224 IPR011990 GO:0005515
Ssu1g3516 749 Gene3D Tetratricopeptide repeat domain 5 119 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3516 Ssu-Chr1 89896501 89898750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3516 122 749 Glycoside Hydrolase AT3G49170 30.327 6.60e-88 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3516 - - gmx:100780090 1330.85