Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3513 ATGTCGATTTTACCGAAAGGCGATTCGATTCAAATCAGGGAGGTTTGGAACGATAACCTCGAAGAGGAGTTTGCGTTGATCCGCGAAATCGTTGACGAATATAACTATGTCGCCATGGATACGGAGTTCCCCGGCGTGGTTCTACGTCCGGTGGGGAATTTCAAGAACATCAACGACTATAACTACCAAACGTTGAAGGACAACGTTGACATGTTGAAGCTGATCCAATTAGGTCTCACTTTCTCCGACGAGCACGGGAACCTCCCTACCTGCGGCACGGACAATTTCTGCATCTGGCAATTCAACTTCCGCGAGTTCAACATCAGCGAAGACATCTTCGCGAGCGATTCGATCGAGTTGTTGCGCCAGTGCGGGATCGATTTCAAGAAGAACAACGAGAAGGGAATTGACGTGAACCGGTTCGGGGAGCTTCTCATGTCTTCTGGAATTGTGTTGAACGACGCTGTGCATTGGGTTACCTTCCACAGCGGTTACGATTTCGGTTACCTCCTTAAGCTGTTGACATGCCGAAGCTTGCCCGATACGCAGGCTGGGTTCTTTGATTTGATCAAGATCTATTTCCCGATGGTGTATGATATCAAGCACTTGATGAAGTTCTGCAACAGCCTCCACGGTGGGTTGAACAAGCTTGCGGAGTTGTTGGAGGTGGAGAGGGTTGGCGTGTGCCATCAGGCTGGGTCCGATAGTTTACTCACGTCTTGTACATTTAGAAAGTTGAGGGATACGTTCTTCAATGGCTCGACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGTGTTGAGAGTGGACAGactaattga 822 0.483 MSILPKGDSIQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDEHGNLPTCGTDNFCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKIYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFNGSTEKYAGVLYGLGVESGQTN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3513 273 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
Ssu1g3513 273 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED 1 272 - -
Ssu1g3513 273 Gene3D - 2 268 IPR036397 GO:0003676
Ssu1g3513 273 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 272 IPR039637 GO:0004535|GO:0030014
Ssu1g3513 273 SUPERFAMILY Ribonuclease H-like 12 265 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3513 Ssu-Chr1 89839771 89840592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3513 K12581 - gmx:100798365 546.199