Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3500 ATGGCGTCAAAGAAGAAGCATTCCGAGGGCATCGCCCTGCTGTCCATGTACAACGACGACGGGGACGACGAAATGGAGGACgccgaagaagaagaagaagaagaagaagaaggcgATGCAGGGACGCGCACGGAAGAAGATGCCGCCGGAGATGCGAGATTTGCGGCGGATGAAGATTCCGCCAATAAAACGGCGGTCGTTGATTCCGGCAACGAGGCCGCGGTTGAGGGATCCACTCCGGTGGAGAAGAGTAGGGTTGAGACTTCGACGCTGCAGACGAACACAATGGTTTCGCGGCCGCGGGGGCAACCTAGGATTGGTCGGAAAGGGGCGCTTACGATAGTGGATTATGGGCCCGACGAAGTGGCAATGTCACCTGAACCTGAGGAGGGAGAGATATTTGGCAGCGGTCGAGTCATGTTTGGGGATCAGCTTCATGTCATCAATgGTGATTTGCCAGACAGAACACCATCAGGAACAGTCCAAGTTTTGACACCTGGCAATCAAGCTAACACTCCTCAGCTCTCTGAGCCACTGAAATCTAATACCATGAACAATGATGCTGTGATCAGATCAGATGATGCAGAAGTTGGAGAAGCAGATCAAGATGAGCAAAGATTAATAGATCCATTGGATAAATTTCTCCCTCCACCACCAAAAGCTAAATGCTCAGAGGAGCTACAAagaaaaataaataaattcctgGATTATAAGAAGGCTGGAAAAAGTTTTAATGCAGAAGTTCGCAACAGGAAGGACTATCGAAACCCTGACTTCTTACTGCATGCAGTGAGGTACCAGGATATTGATCAAATAGGGTCTTGCTTCAGTAAAGATGTATTTGACCCTCATGGATATGATCCGAGCGACTTCTATGATGAAATAGAAGCTGATATGAGGCGCGAAAGTGAGAGGAAAGagcaagagaagaagaaagcacAGAAGGTTGAATTTATTTCAGGGGGTACACAACCAGGAATTGGAGCTAGCGCTCCTAGGATTAGCATGCCTGTTGCAGGTGCTTCTGCTGTGACTGCAAGTGGATTGCCTTTGGTGCCTCCTACAGCTGATTCTATTAATCGGGATGGTAGACagaacaaaaaatcaaaatgggATAAGGTGGATGGTGATCGAAAAAATCCTCTGCCCTCTGCGGGGCAGGATTCTGTATCTACTATTGGGGCACATGCAGCAATTTTGTCTGCTGCTAGTGCTGGTGGTGGATACATGCAATTTGCTCAAATGGCTGGAATATCCAGTTCTGACAAGTGGCAGTTAGCTGATATTGTTGTGTTTGATAcaataaatctaatattttgttgGACAGGCAACAAAAACGGAGAGAGGCAGAGGAGAAAAGATCTAGTGAAAGGAGCTGAGTTGAAAAAGTGGCACTGGGTTTCTGCTGTCCAGCTATTCGTGCTTTATAGTCAGTCTACTATATACATGTATTCCTTTGATAAAGCTGAAGAGGAAACCGTGCCCATATCTGTCTTTGCTCCTTTGCTTTATCATCTCGATAAATATGTAATGCTTATGGCATTGTAG 1548 0.4367 MASKKKHSEGIALLSMYNDDGDDEMEDAEEEEEEEEEGDAGTRTEEDAAGDARFAADEDSANKTAVVDSGNEAAVEGSTPVEKSRVETSTLQTNTMVSRPRGQPRIGRKGALTIVDYGPDEVAMSPEPEEGEIFGSGRVMFGDQLHVINGDLPDRTPSGTVQVLTPGNQANTPQLSEPLKSNTMNNDAVIRSDDAEVGEADQDEQRLIDPLDKFLPPPPKAKCSEELQRKINKFLDYKKAGKSFNAEVRNRKDYRNPDFLLHAVRYQDIDQIGSCFSKDVFDPHGYDPSDFYDEIEADMRRESERKEQEKKKAQKVEFISGGTQPGIGASAPRISMPVAGASAVTASGLPLVPPTADSINRDGRQNKKSKWDKVDGDRKNPLPSAGQDSVSTIGAHAAILSAASAGGGYMQFAQMAGISSSDKWQLADIVVFDTINLIFCWTGNKNGERQRRKDLVKGAELKKWHWVSAVQLFVLYSQSTIYMYSFDKAEEETVPISVFAPLLYHLDKYVMLMAL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3500 515 MobiDBLite consensus disorder prediction 19 42 - -
Ssu1g3500 515 MobiDBLite consensus disorder prediction 351 389 - -
Ssu1g3500 515 PANTHER TRANSCRIPTIONAL REGULATOR PROTEIN HCNGP 1 406 IPR012479 GO:0006355
Ssu1g3500 515 Coils Coil 292 316 - -
Ssu1g3500 515 Coils Coil 18 38 - -
Ssu1g3500 515 MobiDBLite consensus disorder prediction 82 100 - -
Ssu1g3500 515 MobiDBLite consensus disorder prediction 43 58 - -
Ssu1g3500 515 MobiDBLite consensus disorder prediction 1 108 - -
Ssu1g3500 515 MobiDBLite consensus disorder prediction 361 379 - -
Ssu1g3500 515 Pfam HCNGP-like protein 215 308 IPR012479 GO:0006355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3500 - - gmx:100527074 650.588