Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3496 ATGATGGAATCCAGGGCTCACTTTTGCAACTCTTGTGGTGAACAAGTTGGACTTGATGCTAATGGGGAGGTGTTTGTGGCTTGTCATGAGTGCTATTTTCCTATTTGCAAGGCTtgttttgaatatgaaatcaatGAGGGCCGTAAGGTCTGCTTGAGATGTGCCACTCCCTATGCTGatAGAGCAAAGGATAATGATGACACCAAGGTTCACGGAAATCAATCCACAACGGCTGCCCAGATCAATGTTTCTCagGATGTTGGGCTCCATGCTAGGCATGTCAGTACTGTGTCCACAGTGGATAGTGAATTAAATGATGAATCTGGGAATCCAATCTGGAAAAATAGAGTGGAGAGCTGGaaggaaaaggataaaaagaacaagaagaaaaaggcTGCACCTAAGGCCGAAAATGAGGTGCCAATTCCACCAGAACAGCAGATGGAAGAAATACAGTCCTCAGAGGCTGCTGCTGCTGAGCCACTTTCAATCGTTATGCCAATCCCAAAAACAAGACTTACACCATACAGAATTGTGATAATCGTGCGACTGATAATCTTGGGTCTTTTCTTCCATTATCGAGTTACAAATCCTGTTGACAGTGCTTTTGGTCTGTGGTTGACATCCATCATCTGTGAGATCTGGTTTGCATTTTCCTGGGTGTTAGATCAGTTCCCTAAATGGTCTCCCGTCAACAGGGATACTTTTATTGACAGGCTTTCTGCAAGGTATGAAAGGCCTGGTGAACCCTCTCAGCTTGCTGCTGTGGATTTCTTTGTCAGTACAGTCGATCCTCTGAAAGAACCGCCATTGATCACGGCTAATACAGTGCTTTCTATTCTTGCTGTGGACTACCCTGTGGATAAAGTATCCTGTTATGTGTCAGATGATGGTGCTGCAATGCTGACATTTGAGTCCCTTGTGGAGACAGCTGACTTTGCAAGAAAGTGGGTTccattttgcaaaaaattttcgATTGAACCCCGAGCACCTGAGTTCTACTTCTCTCAGAAGATTGACTACCTGAAGGACAAAGTACAGCCTTCTTTTGTGAAGGAACGTAGAGCAATGAAGAGAGACTATGAAGAGTTTAAAGTGCGAATTAACGCTTTGGTAGCAAAGGCTCAAAAAACACCAGATGATGGATGGACTATGCAAGATGGAACCCAATGGCCAGGAAATAACTCACGTGATCACCCTGGCATGATTCAGGTTTTCCTTGGACACAGTGGTGCCCACGACATTGAAGGAAATGAACTTCCCAGGTTGGTGTATGTTTCCAGGGAGAAAAGGCCAGGTTACCAACACCACAAAAAGGCTGGTGCTGAAAATGCACTGGTGAGGGTGTCTGCAGTTCTCACAAATGCTCCCTTCATTCTCAATCTTGACTGTGATCATTATGTGAACAATAGCAAGGCTGTTCGGGAAGCAATGTGTTTTCTAATGGATCCAGTAGTTGGTAGAGATTTGTGTTATGTGCAGTTTCCCCAGAGATTTGATGGTATTGATCGTAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGAtGTTAACATGAAAGGACTTGATGGCATTCAAGGACCTGTATATGTGGGAACTGGATGTGTTTTCAATAGACAAGCACTTTATGGCTACAGCCCACCTTCTATGCCCAAATTACCAAAATCATCATCCTGCTGTTGCTGCCCCTCAAAGAAGCCAACCAAGGATGTCTCGGAGCTTTATAGAGATGCAAAGAGGGAAGAACTTGATGCTGCCATTTTTAATCTCAGGGAGATTGACAATTATGATGAATATGAGAGGTCAATGCTGATTTCACAAATGAGCTTTGAGAAAACATTTGGCTTGTCCACTGTTTTCATTGAATCTACACTAATGGAGAACGGAGGGCTGCCAGAATCTGCTGATCCCTCAATGTTGATCAAAGAGGCCATTCATGTTATTGGCTGTGGATATGAAGAGAAGACTGCATGGGGAAAAGAGATTGGTTGGATCTATGGTTCAGTGACTGAGGATATCTTAACGGGGTTCAAGATGCAATGCCGGGGATGGAGGTCAGTTTACTGCATGCCCTTAAGGCCTGCATTCAAAGGATCAGCACCAATCAACCTTTCTGATCGGTTGCACCAAGTTCTTCGATGGGCCCTTGGATCAGTTGAAATTTTCTTCAGTAGACACTGCCCGCTCTGGTATGGTTTTGCAGGAGGTCGCCTCAAATGGCTGCAGAGACTGGCTTACATAAACACCATTGTCTACCCATTTACATCCCTTCCTCTCGTCGCTTATTGCACTTTGCCTGCAATTTGCCTTCTCACAGGAAAATTCATCATACCAACGCTTTCCAACCTTGCAAGTGCCCTCTTTCTTGGACTTTTCCTGTCCATTATACTCACCAGTGTGCTTGAGCTGCGGTGGAGTGGTGTGACCATTGAAGCTTTGTGGCGTAATGAGCAGTTCTGGGTGATTGGAGGAGTTTCAGCCCATCTGTTCGCTGTGTTCCAGGGATTCCTGAAGATGTTGGCTGGTGTTGATACCAACTTCACTGTCACTACCAAAGCTGCTGATGACACTGAGTTTGGTGAACTATATATCATCAAGTGGACCACACTCCTAATTCCTCCAACAACCCTTATCATTGTTAACATGGTTGGTGTTGTGGCTGGATTTTCTGATGCACTTAATGGAGGATATGAATCTTGGGGACCACTTTTTGGAAAGGTTTTCTTTGCCTTCTGGGTGATTTTTCATCTCTACCCATTCCTCAAGGGTCTCATGGGTCGCCAGAACCGTACTCCAACCATTGTTATTCTGTGGTCAGTGCTGTTGGCCTCTGTCTTCTCTCTGGTCTGGGTCAAGATTAACCCATTTATCAGCAGAGCTGATAGTTCAACCATCTCCCAGACCTGCAATTCTATAGATTGCTAA 2928 0.4378 MMESRAHFCNSCGEQVGLDANGEVFVACHECYFPICKACFEYEINEGRKVCLRCATPYADRAKDNDDTKVHGNQSTTAAQINVSQDVGLHARHVSTVSTVDSELNDESGNPIWKNRVESWKEKDKKNKKKKAAPKAENEVPIPPEQQMEEIQSSEAAAAEPLSIVMPIPKTRLTPYRIVIIVRLIILGLFFHYRVTNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVNRDTFIDRLSARYERPGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEFKVRINALVAKAQKTPDDGWTMQDGTQWPGNNSRDHPGMIQVFLGHSGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPVVGRDLCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYSPPSMPKLPKSSSCCCCPSKKPTKDVSELYRDAKREELDAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSTVFIESTLMENGGLPESADPSMLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMQCRGWRSVYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLKWLQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASALFLGLFLSIILTSVLELRWSGVTIEALWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTTKAADDTEFGELYIIKWTTLLIPPTTLIIVNMVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVILWSVLLASVFSLVWVKINPFISRADSSTISQTCNSIDC 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3496 975 MobiDBLite consensus disorder prediction 115 140 - -
Ssu1g3496 975 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 975 - -
Ssu1g3496 975 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 3 975 - -
Ssu1g3496 975 SUPERFAMILY RING/U-box 2 64 - -
Ssu1g3496 975 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 403 547 IPR029044 -
Ssu1g3496 975 SUPERFAMILY Nucleotide-diphospho-sugar transferases 270 768 IPR029044 -
Ssu1g3496 975 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Ssu1g3496 975 MobiDBLite consensus disorder prediction 116 136 - -
Ssu1g3496 975 Pfam Zinc-binding RING-finger 4 63 IPR027934 -
Ssu1g3496 975 Pfam Cellulose synthase 256 966 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3496 Ssu-Chr1 89427395 89433446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3496 1 975 Glycosyltransferase AT4G18780 82.030 0.0 1677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3496 K10999 - gmx:100806522 1842.01