Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3479 ATGATCTCAGCCATATTGGACACGCTCGCGTATACGTCAATTTCGACCTTCTTTACAGGCAGATACTTTAGGCATTTGGGATTTGAAGTCTGTTACGTTCGCAATTTTACTGACGTAGATGACAAGATAATTGCTAGAGCGAAGGAGTTAGGAGAAGATCCAATCAGTTTGAGCCGGCGCTATTGTGAAGAGTTCTGTCGAGACATGATAACTCTTAATTGTCTGTCTCCCTCTGTGGAACCAAAGGTCTCAGAGCACATGCCCCAAATCATTCATATGATTGAGAAGATTCTTAATAATGGGTATGCCTACGTTGTTGATGGCGATGTATACTTTAACGTAGAAAAATTTCCAGAATATGGGAAACTATCTAGTCGAGATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCAGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCAGGGGAGCCATTTTGGGAGAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCCATGAGTGCCGCTTATCTTGGTTACTCTTTTGACATCCACGGTGGAGGAATTGACCTTGTGTTTCCTCACCATGAGAATGAAATTGCTCAGAGTTGTGCTGCATGTAAGAAAAGTGATATAAGTGTATGGATGCACAATGGTTTTGTCACCGTTGACTCTGTGAAGATGTCAAAATCTTTGGGAAATTTTTTCACAATACGTCAGGTTATAGACGTTTACCATCCACTGGCTTTGAGATATTTTTTGATGAGCGCCCATTATCGATCTCCTATTAACTACTCATATATACAGCTTGAAAGTGCTTCAGACcgtgttttttatatatatgagACATTACACGCATGTGAAAGCTTTTTGAATCAGCATGATCAGACAATTAGGAAGGATTCCATTCCACCAGATACTTTGAATATTATTGATAAGTTCCATGATGTTTTTTTGACCTCAATGTCAGATGATCTTCACACTCCAGTTGTATTGGCTGGAATGTCTGATCCATTAAAATCGATCAATGATTTGCTGCATACCCGTAAGGGGAAAAAACAACAATTTCGAATAGAATCACTTGCAGCTTTGGAGAAGAGCATCAGGGATGTCCTTACTGTTTTAGGACTTATGCCTGCAAGTTACGCTGAGGTTTTGCAGCAGCTTAAGGAAAAAGCTTTAAAGCGTGCAAACTTGACAGAAGATAAAGTCTTGCAGAAAATTGAAGAGCGGGCTGCTGCTAGAATACAAAAGGAGTATGCTAAATCGGACTCAATAAGGAAGGATTTGGCTGTTCTTGGTATTACACTTATGGACAGTCCAACCGGCACAACTTGGAGGCCTACCATTCCGCTTCCGCTTGAAGGGCAGCAGATTGATGCACTTTGA 1410 0.4106 MISAILDTLAYTSISTFFTGRYFRHLGFEVCYVRNFTDVDDKIIARAKELGEDPISLSRRYCEEFCRDMITLNCLSPSVEPKVSEHMPQIIHMIEKILNNGYAYVVDGDVYFNVEKFPEYGKLSSRDLEDNRAGERVAVDSRKKNPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISVWMHNGFVTVDSVKMSKSLGNFFTIRQVIDVYHPLALRYFLMSAHYRSPINYSYIQLESASDRVFYIYETLHACESFLNQHDQTIRKDSIPPDTLNIIDKFHDVFLTSMSDDLHTPVVLAGMSDPLKSINDLLHTRKGKKQQFRIESLAALEKSIRDVLTVLGLMPASYAEVLQQLKEKALKRANLTEDKVLQKIEERAAARIQKEYAKSDSIRKDLAVLGITLMDSPTGTTWRPTIPLPLEGQQIDAL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3479 469 Gene3D HUPs 9 273 IPR014729 -
Ssu1g3479 469 PRINTS Cysteinyl-tRNA synthetase signature 159 177 IPR024909 -
Ssu1g3479 469 PRINTS Cysteinyl-tRNA synthetase signature 190 211 IPR024909 -
Ssu1g3479 469 PRINTS Cysteinyl-tRNA synthetase signature 30 39 IPR024909 -
Ssu1g3479 469 TIGRFAM cysS: cysteine--tRNA ligase 18 454 IPR015803 GO:0004817|GO:0005524|GO:0006423
Ssu1g3479 469 Pfam tRNA synthetases class I (C) catalytic domain 14 280 IPR032678 -
Ssu1g3479 469 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 20 460 - -
Ssu1g3479 469 SUPERFAMILY Nucleotidylyl transferase 12 279 - -
Ssu1g3479 469 Hamap Cysteine--tRNA ligase [cysS]. 3 456 IPR015803 GO:0004817|GO:0005524|GO:0006423
Ssu1g3479 469 Gene3D - 274 455 - -
Ssu1g3479 469 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 311 455 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu1g3479 469 PANTHER CYSTEINYL-TRNA SYNTHETASE 20 460 IPR024909 -
Ssu1g3479 469 Coils Coil 389 410 - -
Ssu1g3479 469 CDD CysRS_core 21 273 IPR032678 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3479 Ssu-Chr1 89098962 89103023 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3479 K01883 - gmx:100786700 868.226