Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3476 atggATGACCCTCCCAAACACCGCCTCCTAACTCTCCTCCACGCCCTCCAACAAGCTTCCAAAGACCTTCACACCAGCACCAACCCCTTTTCTTTCCTCCTCAAAACCGACTCCACTGCCGCCGTCGGCACGGTCCTCGACCTCGAAACCAAGGCCCAGGCCGCCTTCTCCTCCGACCCAAACCTCCGCAAACTCTCCCACATGCTCTCCTCCCTCCGAACCTTAATCAAAAAACTCGACAAGTTCCAAGGCTACGCCCCCCTGTCTCTCCTCCACCGCCACGTCACCAACTACAAAATCTCCCACCTCGCGCGCGCCATCGACTCCGAAATCCAATCCTACGTCGACCGCGTAACGGTCCGCGATCTCGTTGCCGCGCTGCAGGAACCGTCCCTCGAGGAGGAACAACAGGTTAAGGTTCTGGCCGAGTTCCGACAGAGGCTGTCCCAGGGTTTCGATTTAGGGTTCCAGGAGCTGGTTTTACGAGCGAAGGTGTTCACGCTTTTGGAATGCGTGCTGTTCGAGAATTCGAGTTCGAAGCGGGTCAAAGAGGAAGCGGCTATGACTATAGCCGCGTTGGTGAAGTTCAACAAGAACGTGTTTGTCGGGTTGGTGTTGATGGGGCCCACCATCAAGGCCTTGATTGCGATGGCTTCGAGCTGTTCTATGCGGGTTTTGTCGTCCCTGATAAGGTTCATTCGAAGCCCGTTGGTGGACGAGATTCTGTGCAGCGGGGAGATCCCGAGGATTGTTGGGTTTCTGCGCTCAACGGATTTGGGGCTTCGCGTCGCCGCGTTGGACTGCGTGCTTGAGCTTGGGTACATTGGGAGAAGGGAAGTGGTGGAAGCGATGCTCCAGCGGGGGTTGGTTGAGATTCTCATGGACTTGCAAAGAGGGGGTTGTTGTGAAAGTGAGTGTGATTTTGCGTTTGGGAGTTGCGTTTCGAGGTTTGCGATACAAGTGGAAGTGGGGGAGGGGTTGAGCccggaagagaagagagaggttAAGCTCGAGATTCTGAGGATTGTGAAGGAAGCTTCGGAGTCCGAGGCAGAAGCTGCTACCGTTAGTGCGGAGATACTCTGGGGTTCTTCGCCTTGA 1101 0.5459 MDDPPKHRLLTLLHALQQASKDLHTSTNPFSFLLKTDSTAAVGTVLDLETKAQAAFSSDPNLRKLSHMLSSLRTLIKKLDKFQGYAPLSLLHRHVTNYKISHLARAIDSEIQSYVDRVTVRDLVAALQEPSLEEEQQVKVLAEFRQRLSQGFDLGFQELVLRAKVFTLLECVLFENSSSKRVKEEAAMTIAALVKFNKNVFVGLVLMGPTIKALIAMASSCSMRVLSSLIRFIRSPLVDEILCSGEIPRIVGFLRSTDLGLRVAALDCVLELGYIGRREVVEAMLQRGLVEILMDLQRGGCCESECDFAFGSCVSRFAIQVEVGEGLSPEEKREVKLEILRIVKEASESEAEAATVSAEILWGSSP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3476 366 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 4 366 - -
Ssu1g3476 366 SUPERFAMILY ARM repeat 118 298 IPR016024 -
Ssu1g3476 366 Gene3D - 92 300 IPR011989 -
Ssu1g3476 366 PANTHER - 4 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3476 Ssu-Chr1 89056469 89057569 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3476 - - vra:106761341 541.962