Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3473 ATGAAGCAGGCTTCGTCCGAGGCAGTTCCGTCGCTATCATCGGCGCCGTCGTTCACGGAGGCGGCgacgtcgtcgtcgtcgtccgCGGCGGCGGCGGAGGACCTGGCGGTGGGGTCGCGGGACGGCGGCGGCGGCGCGCAGGAGACGGTGGCGGTGGATCGGCGAGGCGAGTACTCGGCGGTGTGCCGATGGACGGTGCACAATTTCCCTCGAATAAAGGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTAGGCGGTTACGATTGTCGGTTGCTAATATACCCCAAGGGTGACTCACAGGCGCTTCCGGGTTACATTTCCATCTACCTCCAAATCATGGACCCTCGCGGCACCTCCTCCTCTAAATGGGACTGTTTCGCGAGCTATCGCTTGGCAATCGTCAACGTCGCCGACGATTCCAAAACCATTCATCGCGATTCCTGGCACCGATTCTCCAGCAAGAAGAAATCGCACGGTTGGTGCGATTTCACGCCCTCCTCCACTGTTTTCGACCCCAAATTGGGGTACCTCTTCAACACCGATTCCGTTTTGATCACCGCGGATATTCTCATTCTCAACGAGTCCGTTAATTTCACGCGCGACAACAATGAGCTGCAGTCCTCTTCCTCGTCGCCGTTGCTGACGGGTTCCTCGGTGGTTGCGGGTCCCGTGTCTGATGTGTTGAGTGGGAAGTTCACTTGGAAAGTGCATAATTTCAGTTTGTTCAAGGAGATGATCAAGACGCAGAAGATAATGAGTCCGGTTTTCCCTGCGGGGGAGTGTAATTTGAGGATTAGTGTGTACCAGAGCTCGGTGAATGGGGTTGAGTATTTGTCCATGTGTTTGGAGAGCAAGGATACGGATAAGACTGTGGTGTTGTCTGATAGGAGTTGTTGGTGTTTGTTTAGGATGTCTGTGTTGAACCAGAAGCCTGGTTCCAATCACATGCATAGGGATTCCTATGGACGGTTTGCGGCGGATAATAAGAGTGGTGACAATACCAGCTTGGGATGGAATGATTATATGAAGATGTCGGATTTTATTGGCGCGGATTCGGGGTTCTTGGTGGATGACACTGCGGTGTTTAGCACCTCTTTTCATGTGATCAAGGAGTTTAGTAGCTTTTCCAAGAATGGGGCTGTGATTGCTGGGAGGAGTGGGAGTGGTGCAAGGAAGTCAGATGGGCATATTGGAAAGTTCACTTGGAGGATTGAGAATTTTACTAGGTTGAAGGATTTGCTGAAGAAGAGGAAGATTACAGGTTTATGCATCAAGAGTAGGAGGTTTCAGATTGGTAATAGGGATTGTCGACTAATTGTTTACCCTCGAGGGCAGTCTCAGCCACCATGCCACCTTTCAGTGTTTCTTGAAGTTACAGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTTAGTCATCGTTTGTCAGTTGTGAACCAGAGGATGGAGGATAAATCTGTCACCAAGGAATCTCAGAACCGCTACTCTAAAGCTGCGAAGGATTGGGGTTGGCGTGAATTTGTGACACTTACCAGTCTCTTTGATCAAGATTCAGGTTTTCTTGTCCAGGACACTGTCATATTCTCCGCTGAAGTTCTTATATTGAAAGAGACATCAATAATGCAGGATTTTACTGAGAATGATTCTGAGTTAAGTAGCAGTGGCCCCCCTGTTGACAGTTATGGGAAAAGAAGTTCATTTACATGGAAAGTGGAGAACTTCCTGTCCTTTAAGGAAATAATGGAGACTCGAAAAATCTTCAGTAAATTCTTTCAGGCTGGTGGATGTGAACTTCGGATCGGTGTATACGAGTCGTTTGACAccatatgtatttatttagagAGTGACCAGGCTGTTGGTAGTGATCCGGATAAAAACTTCTGGGTCAGATACAGGATGGCCGTTGTGAATCAAAAGAACCCAGCCAAGACAGTGTGGAAAGAATCTTCTATTTGTACAAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCAGATGCAGGATTTCTTGTACGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGACTTAGAGGTTTTAGCATCAGAGGATGATCAGGATGCATTGACAACTGATCCTGATGAGCTCATCGATTCTGAAGACAGTGAAGGGATAAGTGGAGATGAGGAAGATATTTTCAGAAATCTTCTTTCCAGAGCTGGATTCCATTTAACATATGGAGATAATCCTTCACAGCCACAGGTTACTTTAAGGGAGAAACTTCTAATGGATGCTGGTGCGATTGCAGGGTTTCTGACTGGACTTCGAGTTTATCTTGATGATCCTGCAAAAGTTAAGCGTCTGCTTCTGCCTACCAAGCTCTCTGGTAGTTGTGATGGGAAGAAGTCCACCAAAGCTGATGAATCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTGCAGCAAGCAATCATTGATTTACTATTGGATATAATGGTTGAGTGCTGCCAACCTTCTGAAGTTGGTCCTGTTGCTGATTCTGTTGATGCATGCTCTAAACCTTCTCCAGATGGCAGTGGAGCTGCTAGTCCTCTTGACTGTGAAAGAGAAAATGGAGCAAAGGAGTTTGCACGAGTTCCTGTTTATAAGAGATTGGATTCTGTTGATGAAGAAAGCAGTAATACATCTGCCGTGCAGAGCTCTGATTTAAATGGGAATGGTATTCACGAAAAAGCTCTTCCTGGACAGCCTATTTGTCCACCAGAGACATCTGCCACTGCTTCAGAAAATGCATCCTTTCGGTCAAAGACCAAGTGGCCGGAACAGTCTGAGGAGCTCTTAGGTCTGATTGTAAACTCACTAAGAGCTTTGGATGGGGCTGTTCCGCAAGGCTGTCCAGAACCAAGACGGCGACCTCAGTCTGCACAAAAAATTGCTCTTGTATTGGATAAGGCTCCTAAGCATTTGCAAGCAGACCTTGTTGCTCTGGTACCCAAATTGGTTGAGCAGTCGGAACACCCACTGGCTGCCTATGCACTTCTTGAGCGACTTCAAAAGCCAGATGCGGAACCTGCTTTACGAATACCTGTTTTCGGGGCTCTCAGTCAATTGGAGTGTGGTAGTGAAGTATGGGAACGCATTCTGTTTCAGTCATTTGAGCTTTTGACAGACTCAAATGATGAACCCCTTGCTTCAACAAtagattttatattcaaagcGGCATCTCAATGTCAACACCTCCCTGAAGCAGTTAGGTCTGTTCGTGTCAGGCTGAAAAATCTAGGTCTTGAGGTGTCGCCTTGCGTCCTTGACTTTTTGAGTAAGACTATAAATAGTTGGGGGGATGTTGCTGAAACCATACTTAGGGACATTGATTGTGATGATGATTATGGTGACAGTTGCTCGGCTCTGCCATGTGGGATTTTCTTATTTGGTGAACATGGCACTGCTCCCAGTGGATTGCATGTGATTGATGAGCAGGCTTATCATGCTAGTCGTCATTTTTCTGATATTTATATACTGTTTGAGATGTTATCTATTCCTTGCCTTGTTGCTGAAGCTTCTCAAACATTTGAGAGAGCTGTAGCTCGAGGTGCAATAAATGCTCAGTCTGTAGCCCTGGTATTGCAAAGCCGTCTTTCCCAAAGATTGAACAGTAATGACGGATATGCTTCTGAAAATTTCCAACATTCAGATGGTGCTACAGAGGCAGATGCCTGTGAGCAATTGGGAGTTCAAAGGGATGATTACACTTCTGTTCTTGGTCTTGCTGAAAATTTGGCACTCTCTAGAGACCCATGCATGAAAGAATTTGTGAAATTGCTCTACATGATAATGTTTAGATGGTTTGCCAATGAATCTTATCGGGGGAGGAtgctgaagaggcttgttgaccGTGCCACTAGCAATACTGACAATGGTCGTGAAGTAGATTTTGATTTGGATATCTTAGTTACTTTGGTCTGTGAGGAGCAGGAGTTTATCAGGCCTGTTTTGAGTATGATGCGTGAAGTTGCTGAACTTGCAAATGTTGATCGGGCTGCTCTATGGCACCAGTTATGTGCTAGTGAAGATGAAATTATTCGTGTTCGTGAAGAAAGCAAAACTGAGATTTCTAATATGGCTAAGGAAAAAGCTATTATATCACAAAAGCTAAGTGAATCTGAGGCCGCAAACAATCGTCTGAAGTCTGAAATGAGGGCTGAGATAGATCGGTTTTCTCGGGAAAAGAAGGAACTAGCAGAACAAGTTCAAGAAGTTGAGAGTCAGCTTGAATGGCTCCGCTCAGAACGGGATGATGAAATTACAAAGCTCTCTGCAGAGAAGAAAGCTCTTCATGACCGTTTACATGATGCAGAGACACAACTTTCTCAATTGAAGTCTCGGAAACGTGATGAATTAAagAAAGTAGTCAAGGAGAAAAATGCTCTTGCTGAAAGATTGAAGAATGCTGAAGCTGCACGCAAGAGATTTGATGAAGAACTGAAAAGATTTGCTACAGAGAATGTGACCCGGGAAGAAATCCGGCATTCACTCGAAGATGAAGTCCGTAGATTGACTCAAACAGTTGGGCAAACTGAAGGAGAAAAGCGGGAGAAGGAAGAGCAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCCAAGTTGCAAGCTTGCCAGCAATATATTCACACGCTTGAAGCCTCCCTCCAGGAGGAAATGTCACGACATGCCCCTCTATATGGTGCTGGTCTGGAGGCTTTATCATTGAAGGAGTTGGAAACACTATCACGTATTCATGAAGACGGGCTTAGGCAGATCCATGCCCTTCAACAGCGTAAAGGGAGTCCTGCTGGGAGCCCTCTTGTGAGTCCTCATGCTCTCCCTCACAACCATGGATTATATCCAACTGCGTCACCCCCAATGGCCGTGGGACTGCCTTCCTCAATCATCCCAAATGGTGTAGGGATCCACAGCAACGGTCATGTGAATGGTGCAGTTGGACCCTGGTTTAATCACACCTGA 5031 0.4508 MKQASSEAVPSLSSAPSFTEAATSSSSSAAAAEDLAVGSRDGGGGAQETVAVDRRGEYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNVADDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGYLFNTDSVLITADILILNESVNFTRDNNELQSSSSSPLLTGSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVVLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGADSGFLVDDTAVFSTSFHVIKEFSSFSKNGAVIAGRSGSGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTENDSELSSSGPPVDSYGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSCDGKKSTKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVADSVDACSKPSPDGSGAASPLDCERENGAKEFARVPVYKRLDSVDEESSNTSAVQSSDLNGNGIHEKALPGQPICPPETSATASENASFRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVALVPKLVEQSEHPLAAYALLERLQKPDAEPALRIPVFGALSQLECGSEVWERILFQSFELLTDSNDEPLASTIDFIFKAASQCQHLPEAVRSVRVRLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDDDYGDSCSALPCGIFLFGEHGTAPSGLHVIDEQAYHASRHFSDIYILFEMLSIPCLVAEASQTFERAVARGAINAQSVALVLQSRLSQRLNSNDGYASENFQHSDGATEADACEQLGVQRDDYTSVLGLAENLALSRDPCMKEFVKLLYMIMFRWFANESYRGRMLKRLVDRATSNTDNGREVDFDLDILVTLVCEEQEFIRPVLSMMREVAELANVDRAALWHQLCASEDEIIRVREESKTEISNMAKEKAIISQKLSESEAANNRLKSEMRAEIDRFSREKKELAEQVQEVESQLEWLRSERDDEITKLSAEKKALHDRLHDAETQLSQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRHSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSLKELETLSRIHEDGLRQIHALQQRKGSPAGSPLVSPHALPHNHGLYPTASPPMAVGLPSSIIPNGVGIHSNGHVNGAVGPWFNHT 1676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3473 1676 Coils Coil 1516 1543 - -
Ssu1g3473 1676 Coils Coil 1392 1437 - -
Ssu1g3473 1676 Coils Coil 1442 1508 - -
Ssu1g3473 1676 ProSiteProfiles MATH/TRAF domain profile. 229 366 IPR002083 GO:0005515
Ssu1g3473 1676 SMART math_3 402 514 IPR002083 GO:0005515
Ssu1g3473 1676 SMART math_3 61 169 IPR002083 GO:0005515
Ssu1g3473 1676 SMART math_3 234 347 IPR002083 GO:0005515
Ssu1g3473 1676 SMART math_3 570 670 IPR002083 GO:0005515
Ssu1g3473 1676 CDD MATH 567 689 IPR002083 GO:0005515
Ssu1g3473 1676 ProSiteProfiles MATH/TRAF domain profile. 397 533 IPR002083 GO:0005515
Ssu1g3473 1676 SUPERFAMILY TRAF domain-like 227 372 - -
Ssu1g3473 1676 CDD MATH 63 189 IPR002083 GO:0005515
Ssu1g3473 1676 CDD MATH 230 362 IPR002083 GO:0005515
Ssu1g3473 1676 Gene3D - 1434 1626 - -
Ssu1g3473 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 389 542 IPR008974 GO:0005515
Ssu1g3473 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 225 372 IPR008974 GO:0005515
Ssu1g3473 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 45 196 IPR008974 GO:0005515
Ssu1g3473 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 557 691 IPR008974 GO:0005515
Ssu1g3473 1676 SUPERFAMILY TRAF domain-like 566 690 - -
Ssu1g3473 1676 PANTHER TRAF-LIKE FAMILY PROTEIN 27 1676 - -
Ssu1g3473 1676 MobiDBLite consensus disorder prediction 928 944 - -
Ssu1g3473 1676 PANTHER TRAF-LIKE FAMILY PROTEIN 27 1676 - -
Ssu1g3473 1676 CDD MATH 398 533 IPR002083 GO:0005515
Ssu1g3473 1676 MobiDBLite consensus disorder prediction 898 913 - -
Ssu1g3473 1676 ProSiteProfiles MATH/TRAF domain profile. 59 189 IPR002083 GO:0005515
Ssu1g3473 1676 MobiDBLite consensus disorder prediction 894 946 - -
Ssu1g3473 1676 MobiDBLite consensus disorder prediction 1613 1633 - -
Ssu1g3473 1676 Pfam MATH domain 68 191 IPR002083 GO:0005515
Ssu1g3473 1676 Pfam MATH domain 429 535 IPR002083 GO:0005515
Ssu1g3473 1676 Pfam MATH domain 578 685 IPR002083 GO:0005515
Ssu1g3473 1676 SUPERFAMILY TRAF domain-like 398 539 - -
Ssu1g3473 1676 SUPERFAMILY TRAF domain-like 58 197 - -
Ssu1g3473 1676 MobiDBLite consensus disorder prediction 853 876 - -
Ssu1g3473 1676 ProSiteProfiles MATH/TRAF domain profile. 565 689 IPR002083 GO:0005515
Ssu1g3473 1676 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3473 Ssu-Chr1 89016394 89026301 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3473 - - ccaj:109798115 3143.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3473 1 89016394 89026301 Ssu1g3473 1 89016394 89026301 ECH