Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3472 ATGCAGAGACGAAGTCCTCCCAAGCACAGGCACGATGGGACTTCGCCGCTGCCTCTCGGCATGGATTGGAGTCCTGCGCCTCGAAAATGGAATGGGCGAGATACAGTGTGGCCACACAATCATCGTACTGGTTGGAGTTATTGTGTCACAATACCTTCTTGGGCCTTTGTTCCAAAATCAAGGAATTCAGATCCTATAGTGTTCTACAGGGTTCAAGTTGGTGTACAGTCACCGGAGGGGATTACAAGGGTCCATGGAGTATTAAGAAGGTTCAATGATTTTCTAAAGTTGTTTGCTGATCTTAAAAAGGAGTTTCCCAGGAAAAATATCCCTCCAGCACCACCCAAGGGACTCTTGCGGTTGAAAAGCCGAGCTTTGTTAGAAGAGAGAAGGTGCTCTTTGGAGGAGTGGGTCACCAAACTATTGTCTGACATTGATGTATCAAGATGTGCTGCAGTGGCATCATTTCTCGAACTAGAAGCAGCTGCTAGATCTTcattccaagatgcAAGCCAGCAGAATTCTGAAACAGATCCTGATTCCAACAACACAGTTTATTCTGTGCAATCACCTCTCCAGTCGAGCTTATCATTAGTTGCTGGCAGTTCATCTGTTGCCTCAGATTATGGTAGTGATACTGCATATGAACCATCTGACCTAGGAACACCAAGAATTGGACGGGACGATAATTCTGAAGTTGGCACAGATGATCTAACATTAGATGAAGATATGACAAATCCAATAGAAAAGCTTGTGAAATATGGCATATCAAATATTGACGAAGGTTTATTTATGGGCCAGACTATTTTAGAGCAATTGGAAGGCCTTCCTAGGCATAAAGCAAATGCCAGACATGTGAACCATATTACAGAGGACAAAAATAATGgtaatttatatgattcttCACTTTTAGCTAATAATACCATGGAGCTTTTCTCTGAGCCTGGGCATGCTAAGGTTGTTGGTCATGCTCGTAAGCTTTCAAATGAGAGTGTTGGAAGTGATGGAAGCTCAATACGAGTTAGTGACATGTCTAATTTTGGGATTCCAAATTCATCCGGTGATGGCTCTCATGACCTTCCTGGATCTGCTTTGGTTTCAAGAGACACAGATATTATGGGCCACACAAAGTTGAAGAGTACTGGTGATACTCAATTAGTTCTTCCACTAGATCAACGCAATAAATTGAACAGGATTCTTTCAACCATGCAGCGAAGGCTAGGCACTGCAAAAACTGATACGGAGGACCTTATAGTCAGATTAAATCAAGAAATAGCTGCAAAGGATTTTCTTGCAACAAAGGTTAAGGATTTGGAAGTAGAACTTGAAACTACCAAACAGAAAAATAAGGAGAACTTGCAGCAGGCTATTCTAATTGAGAGGGAAAGGTTTACCCAAATGCAGTGGGATATGGAGGAACTTAGACGAAAATCATTGGAAATGGAGATGAAACTAAAGTCTGAATTGGGGGGGAATTCTGATCAGAATTTGACAAAGGAACCAATTATTCAGCAGAATGATGTACTGTTGCAGAATATAGATGCTACTAAAGAGCAGTTGGAAATTTTGTCGAAACAGTATGGAGAGCTAGAAGCAAAATCCAAGGCAGACGTTAAAGTTCTGGTTAAAGAGGTCAAATCTCTCCGTAATTCCCAAACGAAGTTAAAGAAAGAACTTAGTGAGTCGATAAAGGAAAAGAGTGAAACTGAGAAGCTACTACTTCACgaaagagagaagagggagCAGGCAGAGGCTGCTTGGGGAAAAATGCTGGAGAAATGCAGGCTTGTTTTCAACCAGCTTCAAGAGTGCAATGTCAGTCTTCCTTATGAACATGAAGATGGGACAATCATGAATTCATCATCATTAACTGATGCTTTTAATCAATTAACAACATCTGATGACCAAATGGACATCCTACTAGCAGAGGTAAAAAACTTAGAGAAGGACTACGGAAGTGGGGCTTCCAATGTAGATAAAACCAATGACATAAAAGATGGGGTAATCTGCGATGATGAACTGAGAAAGATCATAGCAGATTTGTTCATCGATAATGTTAAATTGAGAAAACAGACAAACTGCGTCACAAGGCATGCTCTCAAATTGGACATGACAGCAAGTGATGATTCCCCTTCAATGGAAACTGTAACaagtaattag 2160 0.4019 MQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHNHRTGWSYCVTIPSWAFVPKSRNSDPIVFYRVQVGVQSPEGITRVHGVLRRFNDFLKLFADLKKEFPRKNIPPAPPKGLLRLKSRALLEERRCSLEEWVTKLLSDIDVSRCAAVASFLELEAAARSSFQDASQQNSETDPDSNNTVYSVQSPLQSSLSLVAGSSSVASDYGSDTAYEPSDLGTPRIGRDDNSEVGTDDLTLDEDMTNPIEKLVKYGISNIDEGLFMGQTILEQLEGLPRHKANARHVNHITEDKNNGNLYDSSLLANNTMELFSEPGHAKVVGHARKLSNESVGSDGSSIRVSDMSNFGIPNSSGDGSHDLPGSALVSRDTDIMGHTKLKSTGDTQLVLPLDQRNKLNRILSTMQRRLGTAKTDTEDLIVRLNQEIAAKDFLATKVKDLEVELETTKQKNKENLQQAILIERERFTQMQWDMEELRRKSLEMEMKLKSELGGNSDQNLTKEPIIQQNDVLLQNIDATKEQLEILSKQYGELEAKSKADVKVLVKEVKSLRNSQTKLKKELSESIKEKSETEKLLLHEREKREQAEAAWGKMLEKCRLVFNQLQECNVSLPYEHEDGTIMNSSSLTDAFNQLTTSDDQMDILLAEVKNLEKDYGSGASNVDKTNDIKDGVICDDELRKIIADLFIDNVKLRKQTNCVTRHALKLDMTASDDSPSMETVTSN 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3472 719 SUPERFAMILY PX domain 40 160 IPR036871 GO:0035091
Ssu1g3472 719 Coils Coil 538 586 - -
Ssu1g3472 719 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 1 714 IPR044588 GO:0015031
Ssu1g3472 719 MobiDBLite consensus disorder prediction 168 187 - -
Ssu1g3472 719 Gene3D - 46 186 IPR036871 GO:0035091
Ssu1g3472 719 Coils Coil 630 650 - -
Ssu1g3472 719 Pfam PX domain 87 158 IPR001683 GO:0035091
Ssu1g3472 719 SMART PX_2 55 160 IPR001683 GO:0035091
Ssu1g3472 719 Coils Coil 428 455 - -
Ssu1g3472 719 MobiDBLite consensus disorder prediction 1 26 - -
Ssu1g3472 719 ProSiteProfiles PX domain profile. 47 164 IPR001683 GO:0035091
Ssu1g3472 719 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 1 714 - -
Ssu1g3472 719 Coils Coil 506 533 - -
Ssu1g3472 719 MobiDBLite consensus disorder prediction 207 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3472 Ssu-Chr1 88974904 88985213 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3472 - - gmx:100792151 1273.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3472 1 88974904 88985213 Ssu1g3472 1 88974904 88985213 ECH