Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3456 ATGCATATCTGTAGATATGTTCCACCTTGGCTCTGTCAGATTCTCGATTGCATGGGAGGTTGTCTGGGATGCTTCCCAGAACCTCCTTTAATTAAAGGCCAAGCAATGAACAAAGACAACAGATCAGAAGATTTTTGGAGCAGCAGCGCTTTTGAAATAGATCAGAGTGCACTTCAGTCCCAGAAAAGCATCTCATCAATTGGCATAACTTCTGATCCTCAAAGTAGTGCTGGCATTCAGATCGATTCTCCTGAACATGTCAATCATGGTCTTCTTCTCTGGAACCAGATAAGGAAACGGTGGGTTGGAAATAGAAGGCCTGAGAATAAGAAGCAAGTTGGAGAACCTAAAATAAGTTGGAATGCCACCTACGAGAGTCTAATTGGGACCAACAAGCCTTTTCCCCAGCCCATTCCTCTTGGAGAAATGGTTGACTTTCTTGTTGATATTTGGGAGCTAGAAGGCCTATATGACTGA 477 0.434 MHICRYVPPWLCQILDCMGGCLGCFPEPPLIKGQAMNKDNRSEDFWSSSAFEIDQSALQSQKSISSIGITSDPQSSAGIQIDSPEHVNHGLLLWNQIRKRWVGNRRPENKKQVGEPKISWNATYESLIGTNKPFPQPIPLGEMVDFLVDIWELEGLYD 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3456 158 Pfam Protein of unknown function (DUF4050) 117 158 IPR025124 -
Ssu1g3456 158 Pfam Protein of unknown function (DUF4050) 51 113 IPR025124 -
Ssu1g3456 158 PANTHER DUF4050 FAMILY PROTEIN 1 158 - -
Ssu1g3456 158 PANTHER OS07G0479600 PROTEIN 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3456 Ssu-Chr1 88696928 88700235 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3456 - - gmx:100806290 290.041