Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3453 ATGGACTTAGAAGGAAGTGAAAAGGATTCAGTGGTTACTCAGATTAGCATTGGTGGATTTGACAGTGAGGTCAAAGCAAGTGATCTTGTGACGTACTTGGAGGATAAAATTGGACTCGTATACAGGTGTCGGTTGAAGACTTCTTGGACCCCACCGGAGTCCTATCCAGAATTTAATATCATTGATACTGCACAGATTAGAAGAACGGATGACTATAAGAAGGTGGAACCTCATGCCTTCGTGCATTTTGTATCTCCGGATTCTGTGACTGCAGCCTTGAATGCTTCAGGTTGTTGTGATCTATTTTTGAAGAATCAACCCTTAAAGGTCAGCTGTGGGCCTGAAAATCCATACTTCCTGAACAAAAGGAGGAGAACTACAACTCCTTTTAAGATGTCTGATGTAATAGTTGAAATTGGGACTTTGGTTAGCCCAGGGGAGTTTTTTGTTGCTTGGAGAGGACCTGATAAAGGAGTAAATTTTCTAGTGGATCCTTTTGATGGCATGTGCAGGCTATGTTTCAGTAGAGATACTGCATTCTCATTCAAAGGAGTAGAAAAAAAAGCAGTGATAAAGTGTGATTTTCAGGTGGAATTCCTGGTTAGAGACATTAATGAGATCAGGAGATATAATGATACATCGTATCTCGTTGTTTTATTACACCAAGCTTCTTCACCTTGGGTTTGGTACAGAACTGCCGATGATGACATTGAAGAATCAGTACCATTTGATTTGCTGGATGATGATGATCCTTGGATTAGGACCACTGATTTTACACCTAGTGGGGCCGTTGGTCGAtgcaatttttataaaatttcaatccCACCTCGCCATGGTGCAAAATTGATGAAAGCCATACTTTATCTGAAAGGTCAAAGAGTGCAAGTGCAAGAGCGTCCTTCACTTAGACAGACACTTAGGACAGTGAATGAACCTGATTTTGGGGTGCCCATGTCAGATGCTTTCTTCTATATACATTTTCAGAAGGGCATTGCTTTTGACATAATGTTTTTGGTCAATGCTATTGCACATAAAGGCATATTCAATCAGCACAGGTTGTCGGATAGGTTTTTTGAATTGCTGAGAAATCAACCTAAGGAGCTAAATGTGGCTGCCTTGAAGCATTTATGTTCTTACAAGCGCCCGGTATTTGATGCAGCTAAGAGGCTAAAAACAGTCCAGGAATGGTTGCTCAGAAATCCAAAACTTTATCAGATCTCTAAACAGTTGGATGATATTGTTGAGGTTAGAAGATTGGTTATTACTCCATCAAAAGCCTATTGTATACCGCCAGAAGTTGAATTGTCCAACAGGGTTCTCAGAAAATTCAGAGAAGTTTCAGATTGTTTCTTGAGGGTCGCCTTTATGGATGAAGGCATGCAGACAATTAATGTGAATGCTCTTAACTATTATGTTGCTCCTATAGTGAAGGAAATCACATCAAACTCTTTTCCAcagaagacaaaaatatttaaaagggtGAAAACTATCTTGGAAGAGGGATTTTACTTTTGTGGCcgaaaatattcatttttagccttttcatccaatcaacttAGAGATCGTTCTGCTTGGTTTTTTGCTGAAGACAACAAGATAAGATGTGATGATATACGAAATTGGATGGGCAGGTTTAATCACAGGAATGTTGCAAAATGTGCTGCTAGGATGGGACAATGCTTCTCATCTACCTATGCAACAGTTGAAGTTGCTGCAAATGAAGTTAACTCCGCGCTACCTGATGTTGAGAGGAATAGTTATGTTTTCTCTGATGGTATTGGTATTATCACTCCTGATCTTGCAAGGGAAGTTgcagaaaaattgaaattggacAATGTACCCTCTGCTTACCAGATCAGATATGCTGGTTTTAAAGGGGTTGTAGCCTCTTGGCCTGCTAAAGGGGATGGTGTCAGGCTTTCTTTGAGGCCTAGTATGAACAAGTTTCAATCTACTCATTCTATCTTGGAGATCTGTGCTTGGACCAGGTTTCAGCCCGGTTTTCTTAACAGGCAGATTATAACATTGCTTTCAGCACTGTGTGTGCCTGATGAAATATTTTGGCAAATGCAGGAGGCAATGCTTTTGAAGTTAAATCAGATGCTTGTGGATGCAGATATCGCTTTTGATGTTCTCACCAAATCATGTGCTGACCATGGAAATGCTGCAGCAATAATGTTAAGTTGTGGCTTCAGTCCCCAAACAGAACCTCATCTTAGAGGTATGTTAACTTCTATACGTGCAGCGCAGCTTTGGGGACTTAGAGAAAAGTCCAGGATTTTTGTATCATCTGGGCGATGGTTGATGGGTGTCTTAGATGAGTTGGGCGTGCTTGAACAAGGGCAGTGCTTTGTTCAAGTGTCAACtccttctattgaaaattgtTTCTCAAAGCATGGCTCAAGATTTTCAGAGACAAAGAACCTGCATGTAGTTAAAGGTTTTGTGGTTATAGCCAAAAATCCTTGTCTTCATCCAGGAGATGTAAGGGTTTTGGAGGCAGTTGATGCCCCTGATTTACATCATTTATATGATTGTcttgttttccctcaaaagggTGACAGACCCCATACAAATGAAGCTTCTGGAAGTGACCTTGATGGGGATCTATATTTTGTCACATGGGATGAAAATCTTATCCCACCAAGTAAGAGGAGCTGGATACCTATGGAGTACGCCCCTCAAGAAAGCAAACTTCTGATGCGTCAAGTCACTACCCGAGACATCATAGATTTTTTTGTCAGAAACATGGTAAATGAAAATTTGGGTGCAATCTGCAATGCACATGTGGTACATGCTGATTGCAGTGACTATGGTGCCTTGGATGAGAAATGCATACTCTTGGCTGAGCTAGCAGCCACTGCTGTTGATTTTCCAAAGACCGGGAAGCTTGTCACTATGCCTTCTCATCTGAAACCAAAACTGTACCCTGATTTCATGGGGAAAGAGCAGCACCAGTCTTACAAGTCGAAGAAAATCCTGGGTAGACTTTACCGGCGTATCAAAGATGCTTACAGTGAAGATATTGATGCAGCTGACTTGAACTTTGTGACTGGTGATATACCATATGATAAAGATCTCGAGGTTCCAGGATCTGATGATTTTATTGCTGATGCATGGGACCAAAAATGCTCATATGATGGCCAGTTAAGTGGATTACTTGGTCAATATAAagtgaaaagagaagaagaagtagTTACCGGACAGATCTGGTCCATGCCAAAATACAACAGCAGGAAGCAAGGGGAGCTTAAGGAGAGGCTGAAGCACTCATACAGTGCCCTGAAGAAAGAATTTAGGCACGCTTTTGAGAAATTGAATTCAGATGTTGGAGAATTAAgtgaggaagaaaaaaatttgttgtatgaGCAGAAAGCTTCGGCCTGGTATCAGGTGACATATCATCCTAAGTGGGTGAAAAAATCCCTTGACCGTCAAGATAAATCCCCAGAGAACCAAGAGGCTGATAGTTTGAGAAGTATGGTGATGTTGAGTTTTCCTTGGATTGCAGTTGATTACCTTGCTCGCACAAAGATAAGGCTTCGGCATCAGAGATGTGGAAATTTTGATTCAACTAAGCCAGTTGATTCTCTAGCAAAGTATCTATCTGAAAGGTTATAA 3621 0.3916 MDLEGSEKDSVVTQISIGGFDSEVKASDLVTYLEDKIGLVYRCRLKTSWTPPESYPEFNIIDTAQIRRTDDYKKVEPHAFVHFVSPDSVTAALNASGCCDLFLKNQPLKVSCGPENPYFLNKRRRTTTPFKMSDVIVEIGTLVSPGEFFVAWRGPDKGVNFLVDPFDGMCRLCFSRDTAFSFKGVEKKAVIKCDFQVEFLVRDINEIRRYNDTSYLVVLLHQASSPWVWYRTADDDIEESVPFDLLDDDDPWIRTTDFTPSGAVGRCNFYKISIPPRHGAKLMKAILYLKGQRVQVQERPSLRQTLRTVNEPDFGVPMSDAFFYIHFQKGIAFDIMFLVNAIAHKGIFNQHRLSDRFFELLRNQPKELNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQISKQLDDIVEVRRLVITPSKAYCIPPEVELSNRVLRKFREVSDCFLRVAFMDEGMQTINVNALNYYVAPIVKEITSNSFPQKTKIFKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDNKIRCDDIRNWMGRFNHRNVAKCAARMGQCFSSTYATVEVAANEVNSALPDVERNSYVFSDGIGIITPDLAREVAEKLKLDNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHSILEICAWTRFQPGFLNRQIITLLSALCVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCADHGNAAAIMLSCGFSPQTEPHLRGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSIENCFSKHGSRFSETKNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLLMRQVTTRDIIDFFVRNMVNENLGAICNAHVVHADCSDYGALDEKCILLAELAATAVDFPKTGKLVTMPSHLKPKLYPDFMGKEQHQSYKSKKILGRLYRRIKDAYSEDIDAADLNFVTGDIPYDKDLEVPGSDDFIADAWDQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRHAFEKLNSDVGELSEEEKNLLYEQKASAWYQVTYHPKWVKKSLDRQDKSPENQEADSLRSMVMLSFPWIAVDYLARTKIRLRHQRCGNFDSTKPVDSLAKYLSERL 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3453 1206 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 7 1205 - -
Ssu1g3453 1206 Coils Coil 1096 1116 - -
Ssu1g3453 1206 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 1205 IPR007855 GO:0003968
Ssu1g3453 1206 Pfam RNA dependent RNA polymerase 421 1001 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3453 Ssu-Chr1 88655488 88659544 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3453 K11699 - gmx:100795178 2309.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3453 1 88655488 88659544 Ssu1g3453 1 88655488 88659544 ECH