Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3445 ATGGAAGCAAGTGCGGGAATGGTCGCCGGTTCGCACAAACGGAACGAGCTCGTTCGGATTCGCCACGATTCTTCCGACAGCGGGTCTAAACCCTTGAAGAGTTTGAACGGCCAAATCTGTCAAATATGTGGTGATACTGTTGGATTAACTGCGACTGGTGATGTATTTGTTGCTTGCAACGAGTGTGCTTTCCCTGTGTGTCGTCCTTGTTATGAATATGAACGAAAGGATGGGAACCAGGCTTGTCCTCAGTGCAAGACTAGATACAAGAGGCACAGAGGGAGTCCTCGAGTGGAGggagatgaagatgaagatgattcTGATGATATAGAGAATGAGTTCAATTATGGCCAAGGGAAAACCAAGGCCAGGCGGCAGTGGGAAGAAGATGCTGACCTGTCATCGTCTTCTAGACGTGAATCTCAACAGCCGATTCCCCTCCTCACCAATGGCCAAACGATGTCTGGTGAGATTCCGTGTGCCACACCTGATACTCAATCTGTGCGAACTACTTCGGGTCCTTTGGGCCCATCTGAAAAGGTTCACTCACTTGCCTATATTGATCCAAGGCAACCAGTTCCAGTAAGAATTGTGGACCCGTCAAAGGACTTAAATTCTTATGGTCTGGGAAATGTTGACTGGAAAGAAAGGGTTGAAGGTTGGAAGCTCAAGCAGGAGAAAAATATGGTACAAATGACTGGTAGATATGCTGAAGGGAAAGGAGGAGATGTTGAAGGGACTGGTTCTAATGGAGAAGAACTACAAATGGTTGATGATGCTCGACAACCTATGAGTCGTGTAGTGCCAATTCCTTCATCTCAGCTGACGCCTTATCGTGTTGTTATCATACTCCGGCTGATTATTCTTGGCTTCTTCTTACAATATCGTGTAACTCACCCTGTGAAAGATGCATACCCACTGTGGTTGACATCAGTTATTTGTGAGATTTGGTTTGCCTTATCCTGGCTCTTGGATCAGTTTCCAAAATGGTCTCCCATTAATCGTGAGACTTATCTTGAACGGCTTGCTTTAAGATATGATCGTGAAGGAGAACCATCACAGTTAGATCCTGTTGATGTGTTTGTTAGTACAGTGGATCCCCTCAAAGAGCCTCCTCTTGTAACTGCAAACACCGTTTTGTCTATACTTTCTGTTGATTACCCTGTCGACAAAGTTTCCTGCTATGTATCAGATGATGGTTCAGCTATGTTGACCTTTGAAGCACTATCAGAAACAGCTGAGTTTGCAAAGAAGTGGGTGCCCTTTTGCAAAAAGCACAATATTGAACCAAGAGCCCCAGAGTTTTATTTTGCCCAGAAGATTGATTACTTGAAGGACAAGATTCAACCCTCCTTTGTAAAGGAACGACGGGCAATGAAGAGAGAATATGAAGAATTCAAAGTACGGATCAATGCCCTTGTAGCCAAAGCTCAGAAGATGCCAGAGGAAGGTTGGACAATGCAGGATGGAACTCCCTGGCCTGGAAATAATCCTAGGGATCATCCTGGAATGATTCAGGTGTTTTTAGGTCATAGTGGAGGGCTGGATACAGATGGAAATGAGCTGCCTAGACTTGTTTATGTTTCTCGTGAGAAGCGACCAGGCTTCCAACATCACAAGAAGGCTGGAGCTATGAATGCTTTGATTCGAGTTTCTGCTGTCTTGACCAATGGTGCATATCTTCTGAATGTGGATTGTGATCACTATTTCAATAATAGCAAAGCTCTTAAAGAAGCCATGTGTTTCATGATGGATCCTGTTCTTGGAAAAAAGACATGCTATGTGCAATTCCCGCAGAGGTTTGATGGCATTGACTTGCACGATCGATATGCCAATCGCAATATTGTGTTCTTTGATATCAACATGAAAGGTCAGGATGGTCTTCAGGGCCCAGTCTATGTGGGAACTGGTTGTTGTTTCAGTAGGCAGGCTTTGTATGGTTATGATCCTGTTTTGACTGAGGAAGATTTGGAACCTAACATTATTATAAAGAGTTGTTGGGGTTCTAGAAAGAAGGGAAGGGGTGGCAATAAGAAGTACAGTGACAAGAAGAGGGCGATTAACAGAACTGAATCCACTGTTCCCATATTTAATATGGAAGACATAGAGGAGGGTGTTGAAGGTTATGATGATGAAAGGTCACTACTAATGTCTCAAAAGAGCTTGGAGAAGCGTTTTGGTCAGTCTCCAGTTTTTATTGCTGCCACTTTCATGGAGCAGGGTGGCATTCCACCTTCAACGAACCCTGCAACTCTTCTTAAGGAAGCAATCCATGTCATCAGCTGTGGTTACGAAGACAAGACAGAATGGGGCAAAGAGATTGGATGGATCTATGGTTCTGTGACAGAAGATATCTTGACTGGGTTTAAGATGCATGCTCGTGGTTGGATTTCCATCTATTGCATGCCACCTCGCCCAGCATTTAAGGGTTCTGCTCCTATCAATCTTTCTGATCGTCTCAATCAGGTGCTTCGGTGGGCCTTGGGTTCAATTGAGATCTTTCTAAGCAGGCATTGTCCCTTGTGGTATGGCTACAATGGGAGGTTGAAGCCTCTGATGAGACTTGCTTATATTAACACCATTGTCTACCCCTTCACCTCAATCCCATTGATTGCTTACTGTACGCTTCCTGCATTTTGTCTTCTCaccaataaatttattattcctGAGATAAGCAACTTTGCCAGCATGTGGTTCATTCTCCTCTTCGTCTCTATTTTTACCACTTCAATTCTTGAGCTTAGGTGGAGTGGGGTCAGTATAGAAGACTGGTGGAGAAATGAACAATTCTGGGTTATCGGTGGGACATCTGCGCATCTCTTTGCTGTGTTTCAGGGGCTTCTAAAAGTGCTTGCTGGGATCGATACAAACTTTACTGTTACATCAAAGGCATCGGATGAGGATGGGGACTTTGCCGAGCTTTATGTGTTTAAATGGACATCACTTCTCGTCCCTCCTACCACGGTGCTTATTGTGAATTTAGTAGGGATTGTGGCTGGTGTGTCCTATGCCATAAACAGTGGTTACCAGTCTTGGGGTCCACTATTTGGCAAGCTGTTCTTCGCTATCTGGGTCATTGCCCATTTATACCCATTCTTGAAGGGTCTCTTGGGCAGGCAAAATCGTACCCCAACCATTGTTATTGTTTGGTCCATTCTTCTTGCTTCAATATTCTCCTTGCTGTGGGTGAGGATTGATCCCTTCACCTCTGACTCCAGCAAATTATCCAATGGTCAATGTGGCATCAACTGTTAG 3255 0.4402 MEASAGMVAGSHKRNELVRIRHDSSDSGSKPLKSLNGQICQICGDTVGLTATGDVFVACNECAFPVCRPCYEYERKDGNQACPQCKTRYKRHRGSPRVEGDEDEDDSDDIENEFNYGQGKTKARRQWEEDADLSSSSRRESQQPIPLLTNGQTMSGEIPCATPDTQSVRTTSGPLGPSEKVHSLAYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMVQMTGRYAEGKGGDVEGTGSNGEELQMVDDARQPMSRVVPIPSSQLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWSPINRETYLERLALRYDREGEPSQLDPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGSAMLTFEALSETAEFAKKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPVLGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGQDGLQGPVYVGTGCCFSRQALYGYDPVLTEEDLEPNIIIKSCWGSRKKGRGGNKKYSDKKRAINRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFLSRHCPLWYGYNGRLKPLMRLAYINTIVYPFTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFVSIFTTSILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLVPPTTVLIVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSDSSKLSNGQCGINC 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3445 1084 Pfam Cellulose synthase 358 1073 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu1g3445 1084 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 660 IPR029044 -
Ssu1g3445 1084 MobiDBLite consensus disorder prediction 1 30 - -
Ssu1g3445 1084 MobiDBLite consensus disorder prediction 89 155 - -
Ssu1g3445 1084 SUPERFAMILY RING/U-box 25 112 - -
Ssu1g3445 1084 CDD mRING-HC-C4C4_CesA_plant 38 88 - -
Ssu1g3445 1084 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 21 1084 - -
Ssu1g3445 1084 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 658 IPR029044 -
Ssu1g3445 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Ssu1g3445 1084 MobiDBLite consensus disorder prediction 137 155 - -
Ssu1g3445 1084 MobiDBLite consensus disorder prediction 122 136 - -
Ssu1g3445 1084 Coils Coil 456 476 - -
Ssu1g3445 1084 Pfam Zinc-binding RING-finger 30 106 IPR027934 -
Ssu1g3445 1084 PANTHER CELLULOSE SYNTHASE 21 1084 - -
Ssu1g3445 1084 MobiDBLite consensus disorder prediction 14 28 - -
Ssu1g3445 1084 ProSiteProfiles Zinc finger RING-type profile. 40 86 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3445 Ssu-Chr1 88515532 88521234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3445 1 1082 Glycosyltransferase AT4G32410 87.189 0.0 1924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3445 K10999 - gmx:100810567 2178.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3445 1 88515532 88521234 Ssu1g3445 1 88515532 88521234 ECH