Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3441 ATGTCCATCAACGCTTCAGATTCACTCACCAAGTTAATATGTACAAAGTCTGACTGCACGGAATCCAGTTCCAGGCTCTGGATTCCCCTCGAGACACAGACACACAACACAAAAAAGCAAAGAGAAGGAACTTTCGCTACAAGGACTCGAAATTTTAATCGACAGAGGGGAATCAGAATGACGAACCAGGATGATGTTGTGAACGATATTAAGGCGATGCTGGAGGGGGCAGAGGCACCGGTAACTGACGAGTGTTGCATCTACAGAGTACCCTTTGATATTCGCAAGCTCAACGAAGATGCGTACACTCCAAAGGTTGTTTCTATAGGCCCTTTTCACCACAACGGCCATTCTCGCCTCCGTAACATGGAAAGGCACAAACTCATTTATTGCAAGGCATTTCTTGATCGAACCAAAACAAGTTTGGCCAGCTGCATCCGCTACATAGAAGGGGAGGAGCCCAAATTTCGTCGCTGTTATTCAGAAACCCTTCAGTTCAGCAAGGAAGAACTGGTGAAAATGATCTTTGTGGATTCTGGTTTTATATTTGAGCTTTTTTGGAGTAATTATTATGGTGAATGGTCAATGAGTGACACGTTTCTTTCAAAACCTTGGTTGACCACTAATATAAGATTGGACTTGTTGTTAGTTGAGAACCAGCTTCCGTTTTTTGTTCTTGACGGTCTCTTCAAACTGTCCTTCACCTCTAGATCCGGCTCTGGTAACCAAAGGATCCCTTCATTTATTGAGCTTACATTTGACTATTTTGTCTATTACAATAGATCCAACTTGAATTTCCGTAATATTGGCATAAGGCACTTCACGGATCTAATAAGAACTTTTCACTTGCAACATCCTCCGCAAAGACGACCGCCGAGGACTGATGAATCACTGATACATCTTCATAGTGTTACTGAGTTGTTAGAAGCAGGAGTGAGGTTTAAGGTAAACACCAAAAGTAACTGCTTGCTAGACTTGAAATTTTCAGGAGGGGTTCTTGAAATCCCGGAGTTGAAAGTGGAAGATTGGACTGAGCTTCTGTTTCGCAATATGGTGGCTCTGGAGCAGTGTCACTATCCTTCCGAATCCTTCATTACCGATTATGTTGCTGTTTGGGACTTCCTTGTAAACACCAGTAGAGATGTGGATATACTGGTCCGAAAGAGAGTACTTGTGAACTGGCTAGGGGATAGTGATTCTGTAGCTGACCTGTTTACTGGTCTTTGGAAAAATATTACGCATTTAAATTTCAGTTCCGATTACTTTTATCTCTGCCGAGACTTGAATGCTTTTTGTAGAGATCCTTGGCATAAAATGAAGTCCACTCTGAGGCGGGATTATTGTAGCACTCCTTGGCAAACTGCTGCTTCTATTGCTGGAATTATTCTTCTTATTCTCTCTTTGGTTGAAACAGTTTGTTCTGTCTTGCAAGTAATACAGCACTAG 1446 0.4225 MSINASDSLTKLICTKSDCTESSSRLWIPLETQTHNTKKQREGTFATRTRNFNRQRGIRMTNQDDVVNDIKAMLEGAEAPVTDECCIYRVPFDIRKLNEDAYTPKVVSIGPFHHNGHSRLRNMERHKLIYCKAFLDRTKTSLASCIRYIEGEEPKFRRCYSETLQFSKEELVKMIFVDSGFIFELFWSNYYGEWSMSDTFLSKPWLTTNIRLDLLLVENQLPFFVLDGLFKLSFTSRSGSGNQRIPSFIELTFDYFVYYNRSNLNFRNIGIRHFTDLIRTFHLQHPPQRRPPRTDESLIHLHSVTELLEAGVRFKVNTKSNCLLDLKFSGGVLEIPELKVEDWTELLFRNMVALEQCHYPSESFITDYVAVWDFLVNTSRDVDILVRKRVLVNWLGDSDSVADLFTGLWKNITHLNFSSDYFYLCRDLNAFCRDPWHKMKSTLRRDYCSTPWQTAASIAGIILLILSLVETVCSVLQVIQH 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3441 481 Pfam Plant protein of unknown function 87 466 IPR004158 -
Ssu1g3441 481 PANTHER UPF0481 PLANT-LIKE PROTEIN 64 480 - -
Ssu1g3441 481 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 64 480 IPR004158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3441 Ssu-Chr1 88372112 88373688 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3441 - - gmx:100785283 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3441 1 88372112 88373688 Ssu1g3441 1 88372112 88373688 ECH