Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3440 ATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTTCAGAGAAGAGAATCGTGCCAGAGATGCGCGGAGCCAAGGAGTGGCGGTGACTACGGTGGCAGCCTTGGTGGGAGAGGCTCTTCCTCGTTTGGCTTCACCACCGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACGGTTGGAAACTGTGGAGCCCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCTCCAAGGAGGACTCCTCCGCCGGACCATATGACGCCGACATGCCCCGAATGAGACCCTACGGCTTTGGCGGCGGCACCTCCGCCCGCCCCGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCTGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGCTACCGATGCAATGCACCGAGGGACTCTAGTAGTGGCAGGTCTCCCTATTCATCGTAG 471 0.5945 MSRPGDWNCRTCNHLNFQRRESCQRCAEPRSGGDYGGSLGGRGSSSFGFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGASKEDSSAGPYDADMPRMRPYGFGGGTSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSGRSPYSS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3440 156 SMART zf_4 118 144 IPR001876 -
Ssu1g3440 156 SMART zf_4 58 84 IPR001876 -
Ssu1g3440 156 SMART zf_4 5 29 IPR001876 -
Ssu1g3440 156 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
Ssu1g3440 156 Pfam Zn-finger in Ran binding protein and others 3 27 IPR001876 -
Ssu1g3440 156 Pfam Zn-finger in Ran binding protein and others 56 87 IPR001876 -
Ssu1g3440 156 Pfam Zn-finger in Ran binding protein and others 116 145 IPR001876 -
Ssu1g3440 156 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Ssu1g3440 156 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 149 - -
Ssu1g3440 156 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Ssu1g3440 156 SUPERFAMILY Ran binding protein zinc finger-like 110 148 IPR036443 -
Ssu1g3440 156 PANTHER ZINC FINGER PROTEIN 1 149 - -
Ssu1g3440 156 Gene3D - 51 88 - -
Ssu1g3440 156 Gene3D - 110 147 - -
Ssu1g3440 156 Gene3D - 2 33 - -
Ssu1g3440 156 ProSiteProfiles Zinc finger RanBP2 type profile. 116 147 IPR001876 -
Ssu1g3440 156 ProSitePatterns Zinc finger RanBP2-type signature. 120 141 IPR001876 -
Ssu1g3440 156 ProSitePatterns Zinc finger RanBP2-type signature. 60 81 IPR001876 -
Ssu1g3440 156 ProSiteProfiles Zinc finger RanBP2 type profile. 56 87 IPR001876 -
Ssu1g3440 156 SUPERFAMILY Ran binding protein zinc finger-like 52 88 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3440 Ssu-Chr1 88281995 88283158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3440 - - gmx:100811107 291.582