Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3439 ATGAGCTACAGCAGTTCCTCTATGAGTTCTGGTAGTGGGACTTCTAGAAGGACATTTGAGTTTGGAAGGACCCATGTGGTCAGACCTAAAGGGAAACACCAGGCAACTATAGTTTGGCTACATGGCCTTGGTGATAATGGCtcaagcTGGTCTCAACTCTTGGAAACTCTTCCTCTTCCAAATATTAAATGGATTTGCCCAACTGCTCCAACACGGCCTGTAGCCATATTTGGTGGATTTCCTTGCACTGCTTGGTTTGATGTTGGGGAGATTTCAGCAGATGCTCCTAATGATTTGgagggtttagatgcttctgCAGCACATGTTGCCAATCTTTTGTCAACAGAGCCTCCAAATATCAAACTTGGTATTGGGGGCTTCAGTATGGGTGCTGCAACTGCACTTTACTCAGCTACATGCCATGTTTTGGGGCACTATGGGAATGGAAACATTTACCCTATCAGCTTAAGTGCAATTGTTTCTTTAAGTGGCTGGCTTCCTCGTTCAAGGACCTTGAAAAACCAAATTGAACAATCACGTGATGGCATAAGGCGTGCAGCATCATTGCCCTTATTTCTCTGCCATGGAAGAGGTGATGATGTGGTTGCATATGAACATGGAGAGATGTCTGCAACGACCTTAAGTTCAACAGGATTCCAGAACCTTATATTTAGGAGCTACAATGGGTTGGGTCACTATACAGTCCCTGAAGAGACTGATGAAGTTTGCAGGTGGCTAACTGCAAATTTGGGACTGGAGGGGTTTCGGTTGAACTAG 777 0.435 MSYSSSSMSSGSGTSRRTFEFGRTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPVAIFGGFPCTAWFDVGEISADAPNDLEGLDASAAHVANLLSTEPPNIKLGIGGFSMGAATALYSATCHVLGHYGNGNIYPISLSAIVSLSGWLPRSRTLKNQIEQSRDGIRRAASLPLFLCHGRGDDVVAYEHGEMSATTLSSTGFQNLIFRSYNGLGHYTVPEETDEVCRWLTANLGLEGFRLN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3439 258 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 254 - -
Ssu1g3439 258 SUPERFAMILY alpha/beta-Hydrolases 25 249 IPR029058 -
Ssu1g3439 258 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 254 - -
Ssu1g3439 258 Pfam Phospholipase/Carboxylesterase 25 247 IPR003140 GO:0016787
Ssu1g3439 258 Gene3D alpha/beta hydrolase 14 251 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3439 Ssu-Chr1 88241048 88245269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3439 1 254 Acyl Lipid Metabolism Gene Families AT5G20060 66.142 3.63e-128 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3439 K06130 - gmx:100811642 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3439 1 88241048 88245269 Ssu1g3439 1 88241048 88245269 ECH