Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3433 ATGGCTCTGCCCAATCAGCAAACCGTTGATTACCCTAGTTTCAAACTCGTTATAGTCGGTGACGGTGGCACAGGAAAGACAACCTTCGTGAAAAGGCATCTTACCGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGTGGAAGTTCACCCATTGGATTTTTTCACAAACTGTGGAAAGATTCGCTTCTACTGTTGGGATACTGCTGGACAAGAGAAGTTTGGTGGCCTCAGAGATGGATATTATATCCATGGGCAATGCGCgattataatgtttgatgttaCTGCCCGACTAACATACAAAAATGTCCCTACCTGGCACCGTGATCTTTGTCGGGTCTGTGAAAACATCCCAATTGTTCTTTGTGGTAACAAGGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTATGAGATATCAGCTAAGAGCAACTACAACTTTGAGAAGCCTTTCCTGTATTTGGCCAGGAAACTTGCAGGTGATCCTAACCTGCACTTTGTAGAATCTCCTGCATTGGCTCCACCAGAAGTTCAAATTGATTTAGCTGCACAGCAACAGCACGAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCCTGACGATGATGATGACACTTTTGAGTAA 666 0.4414 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3433 221 Gene3D - 4 219 IPR027417 -
Ssu1g3433 221 SMART ras_sub_4 11 174 - -
Ssu1g3433 221 CDD Ran 14 179 - -
Ssu1g3433 221 Pfam Ras family 15 171 IPR001806 GO:0003924|GO:0005525
Ssu1g3433 221 SMART rab_sub_5 14 174 - -
Ssu1g3433 221 MobiDBLite consensus disorder prediction 199 221 - -
Ssu1g3433 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924|GO:0005525|GO:0006913
Ssu1g3433 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 74 92 IPR002041 GO:0003924|GO:0005525|GO:0006913
Ssu1g3433 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 94 115 IPR002041 GO:0003924|GO:0005525|GO:0006913
Ssu1g3433 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 130 148 IPR002041 GO:0003924|GO:0005525|GO:0006913
Ssu1g3433 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 168 190 IPR002041 GO:0003924|GO:0005525|GO:0006913
Ssu1g3433 221 ProSiteProfiles small GTPase Rab1 family profile. 8 221 - -
Ssu1g3433 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 194 IPR027417 -
Ssu1g3433 221 SMART ran_sub_2 19 220 - -
Ssu1g3433 221 ProSiteProfiles small GTPase Ras family profile. 5 205 IPR001806 GO:0003924|GO:0005525
Ssu1g3433 221 PANTHER RAN GTPASE 1 221 IPR002041 GO:0003924|GO:0005525|GO:0006913
Ssu1g3433 221 TIGRFAM small_GTP: small GTP-binding protein domain 14 164 IPR005225 GO:0005525
Ssu1g3433 221 PANTHER GTP-BINDING NUCLEAR PROTEIN 1 221 - -
Ssu1g3433 221 ProSiteProfiles small GTPase Ran family profile. 7 171 IPR002041 GO:0003924|GO:0005525|GO:0006913
Ssu1g3433 221 SMART rho_sub_3 16 170 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3433 Ssu-Chr1 88096042 88097904 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3433 K07936 - pvy:116115705 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3433 1 88096042 88097904 Ssu1g3433 1 88096042 88097904 ECH