Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3427 ATGGCTACTACTCCTTCTACATACCCATTTGGAATCCCTTTCCACTCCCAGGGTCGCAGAGTGGATTGCTCAACCTCCCTGTTCCCCCTTCGTGTGGACCTCTCAACAATTTCTATGTGCCCACGTTCTGCCTCAAAGGGTTTAATTGATCGAGTATATGCACGACTTGATAGTGATGATGATTTCTACCGGGAGAAAGTTCCAACACCCATGCTTGACATGGTTGAAAACCCTCTTTGCTTGAAGAACTTATCTCTTAAGGAAATGAAACAGCTAGCAGTTGAAATCCGTTCAGATTTGTCTTCTATTATGTCAGGGACACAAATATCACCGAAAGCAAGTATGGCGGTGGTGGAGCTGACAGTTGCAATACATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAGAAAGGCGATCACTTATGAATACAATGAGAAGAAGGAATGGCCTTTCTGGTTTTACTTGCCGGTCTGAGAGTGAATATGATGCATTTGGTGCAGCTCATGGATGCAACAGTATTTCTGCTGGACTTGgCATGGCAGTTGCACGGGATATTAAGGGGAGGCGAGAACGCGTAGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGCATATGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTTGTGATTTTGAATGATAGCCGTCACTCTTTACTTCCAAAAATTGAGGAAGGCCCAAAGACATCTGTCAATGCCCTATCTAGTACCCTAAGCAAGCTCCAGTCCAGTAAATCATTCCGAAGATTTAGAGAAGCTGCTAAGGGTGTTACAAAACGAATTGGTAGAGGCATGCATGAGTTGGCAGCTAAAGTTGATGAATATGCTCGTGGTATGATGGGTCCTCTAGGTTCTACTCTTTTTGAAGAGCTTGGGTTGTACTACATAGGCCCAGTGGATGGACACAATATTGAAGATCTAATATGTGTTCTACAAGAAGTAGCTTCCCTGGATTCCATGGGACCTGTCTTGGTACATGTGATAACTGATGAAAATCAGGGAGATGAAAACAGTCAGAAAAGTGATATAACAGACAGACAGCAGGATGATGATTCTGTTAAATCTGATTCATTAGATAATGCTGTTCGGCCTCGAACATATGGTGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCAGAGAAAGACAAAGATATTGTCATTGTTCATGCAGGAATAACGATGGAGCCATCACTTGAACTATTTCGGGAAAATTTTCCAGATAGGTTTTTTGATGTGGGAATGGCTGAGCAACATGCAGTCACATTTGCTTCTGGTTTGGCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTTCTACAAAGAGCCTATGACCAGGTGGTACATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTCCAATGTGGAGCATTTGATATAACCTTTATGTCATGCTTACCAAATATGATTGTCATGGCCCCATCTGATGAGGTTGAACTTGTGCACATGGTGGCTACTGCGACTCGTATCAACAATCAGCCAGTCTGCTTTCGGTATCCAAGGGGTGCCCTGGTTGGGAAAGGCCACACTATAAGCGATGGAATCCCCATCAAGATCGGAAGAGGAAGAGTTCTTGTTGAAGGTAAAGATGTTGCTTTCCTAGGATATGGATCGATGGTTCAGAACTGCCTAAAGGCTCATTCACTCCTTACAAAGCTTGGCGTTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGGCAGCTCTGTAAACATCACTCTTTTCTAATTACTGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGGTCAGTTTATTGCACTTAATGGACTGCTTGATGGAAGAATTAAGTGGCGACCAATTGTCTTACCTGACAGATATATTGAGCATGCATCACCAAATGAACAGCTTGACCAAGCGGGGTTGAGTGGACATCACATTGCTGCCACGGCATTGAGTTTGCTGGGCCGTACCCGGGAAGCTCTCCTATTCATGTGTTCGTGA 2142 0.4374 MATTPSTYPFGIPFHSQGRRVDCSTSLFPLRVDLSTISMCPRSASKGLIDRVYARLDSDDDFYREKVPTPMLDMVENPLCLKNLSLKEMKQLAVEIRSDLSSIMSGTQISPKASMAVVELTVAIHHVFHAPVDKILWDVGDQTYAHKILTERRSLMNTMRRRNGLSGFTCRSESEYDAFGAAHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTSVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVITDENQGDENSQKSDITDRQQDDDSVKSDSLDNAVRPRTYGDCFVETLVAEAEKDKDIVIVHAGITMEPSLELFRENFPDRFFDVGMAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELVHMVATATRINNQPVCFRYPRGALVGKGHTISDGIPIKIGRGRVLVEGKDVAFLGYGSMVQNCLKAHSLLTKLGVEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVGQFIALNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALLFMCS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3427 713 MobiDBLite consensus disorder prediction 360 385 - -
Ssu1g3427 713 Pfam Transketolase, C-terminal domain 570 693 IPR033248 -
Ssu1g3427 713 Pfam Transketolase, pyrimidine binding domain 393 554 IPR005475 -
Ssu1g3427 713 SMART Transket_pyr_3 392 557 IPR005475 -
Ssu1g3427 713 MobiDBLite consensus disorder prediction 357 387 - -
Ssu1g3427 713 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 71 702 IPR005477 GO:0008661|GO:0016114
Ssu1g3427 713 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 72 356 IPR005477 GO:0008661|GO:0016114
Ssu1g3427 713 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 3 712 - -
Ssu1g3427 713 CDD TPP_DXS 113 361 IPR005477 GO:0008661|GO:0016114
Ssu1g3427 713 Gene3D - 64 363 - -
Ssu1g3427 713 Gene3D - 570 701 IPR009014 GO:0003824
Ssu1g3427 713 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 3 712 IPR005477 GO:0008661|GO:0016114
Ssu1g3427 713 SUPERFAMILY TK C-terminal domain-like 565 701 IPR009014 GO:0003824
Ssu1g3427 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 391 580 IPR029061 -
Ssu1g3427 713 Gene3D - 392 561 - -
Ssu1g3427 713 CDD TPP_PYR_DXS_TK_like 398 551 - -
Ssu1g3427 713 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 74 699 IPR005477 GO:0008661|GO:0016114
Ssu1g3427 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 69 454 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3427 Ssu-Chr1 88039747 88045778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3427 434 652 Acyl Lipid Metabolism Gene Families AT1G55510 23.932 2.37e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3427 K01662 - gmx:100787937 1308.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3427 1 88039747 88045778 Ssu1g3427 1 88039747 88045778 ECH