Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3426 ATGTCTAAGGCTCATCTTTTCTCCCTTCGCCTAATCCTGTCGAGTCTCGTCCTCTCATCACTCTTCATCCACTGCTCTCTAGCTGACGTTGGCACTGCTGCCCAATATGGCCCTCCCTTTTTGCCCACCACGTGTTTCGGCAGAGACGCATCACGGTTCCCATCCAATAACATGTTTGGTGCGGCAGGGGAAGGTATATGGGACAATGGTGCGGCATGTGGGAGGCAGTATCAGGTGCGGTGCATCAGCGCAGCGGCTCCTAGAACTTGCTTTCCTGGCCAGACGATTCAGATCAAGATTGTTGATCGAGCACAATCATCGGTTTCTAGGCCTTCCGTAGGGGGAACTTCCATGGTCCTCTCCACCACTGCCTTCCAGGCCATCGCAAATGCTTCTGCGTCCTTCATTAACATAGAATTCCAGCAGTAA 429 0.5268 MSKAHLFSLRLILSSLVLSSLFIHCSLADVGTAAQYGPPFLPTTCFGRDASRFPSNNMFGAAGEGIWDNGAACGRQYQVRCISAAAPRTCFPGQTIQIKIVDRAQSSVSRPSVGGTSMVLSTTAFQAIANASASFINIEFQQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3426 142 Pfam Lytic transglycolase 66 139 IPR009009 -
Ssu1g3426 142 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 7 142 - -
Ssu1g3426 142 SUPERFAMILY Barwin-like endoglucanases 18 142 IPR036908 -
Ssu1g3426 142 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 142 IPR007112 -
Ssu1g3426 142 Gene3D - 29 142 IPR036908 -
Ssu1g3426 142 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 7 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3426 Ssu-Chr1 88026021 88026605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3426 - - gmx:100803494 228.794