Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3421 ATGGAAAGTGGTGAACTGAGAGTGGCAAGTGCACGCATAGGGAGCTCCAGCGTGTGGAGAAGCAGTGGCGTTGATGTGTTTTCAGGGTCTTCAAGAAGGGATGATGATGAACAAGAGCTTAAATGGGCCGCCATTGAGAAACTCCCCACGTATCTACGCATGACTAGGGGCATTCTCACCGAGGCAGAAGGCCAACCTACGGAGATTGATATAAACAAACTTTGTCCACTTCAGAGGAAGAACTTGGTGGAGAGGCTGGTCAAGATTGCGGAACAAGATAATGAGAAGTTCTTGTTGAAGTTAAGAGACCGCATTGATCGTGTTGGACTTGAAATTCCCACGATTGAAGTCCGTTTTGAGCACTTGAATATTGAGGCGGAGGCTCATGTGGGAAGCAGGGCACTGCCTACAATCTTTAACTTCTGCATTAATTTGTTGGAGGGGTTCCTCAATTCTCTTCACCTTATTCCCAGTCGAAAGAAGCCATTCACAGTTCTTCATGACGTCAGTGGAATCATCAAGCCTAAAAGAATGACACTGCTTTTAGGCCCTCCAAGCTCTGGAAAGACCACATTATTGTTGGCACTGGCTGGAAGACTTGAGATGCTGGCAGAATTGTCAAGAAGAGAGAAGGCCGCAAATATTAAGCCAGAACCTGATCTTGATATTTATATGAAGGCTGCAGCACTAGAAGGCCAAGAAACCAATGTAGTTACAGATTATATAATGAAGATTTTGGGACTAGAAGTTTGTGCTGATACCATGGTAGGCGATGACATGATTCGGGGCATTTCTGGCggacaaaaaaagagagtcacAACTGGTAAACAAAAAAatcttCTAGCTCCTCATGGCAGGTTCATCAAGCAGTACTTTCTGCTTGTTTGTATCAACCAAATGGCATCTGGACTTTTTCGATTTATGGGGGCAGTTGGGAGGAACATCATTGTTGCAAACACAGTTGGGTCATTTGCTTTACTTGCAGTTATGAGCTACGTTCTTTTTGAATCAGTTGATGTGAAGAAGTGGTGGTTGTGGGGTTACTGGTTCTCGCCCATGATGTATGGACAGAATGCTCTAGCTGTGAATGAATTCCTTGGCAAGAGTTGGTCACATGTTCCGCCTAATTCAACAGAACCATTAGGAGTAAAAGTCTTGAAGTCACGTGGGATTTTTCCTGAAGCATACTGGTATTGGATTGGAGTTGGAGCTTCCATTGGATACATGTTACTATTCAACTTCCTTTTCCCCTTGGCCTTACATTATCTTGACCCATTTGGTACACCCCAAGCGTTAATATCAGAAGAAGCCTTAGCTGAGAGAAATGCTGGCAGAAACGAACACGTAATTGAACTATCGCCTAGATTCAAAGGCTCTTCTGGTGGGTTACGAACACATAATTCACATTGGATTGAAAATCGTAGAAGTGTGTCCTCTAGAACACTGTCAGCAAGAGTGGGGAGCATTGGTGCAATTGATCGCAATAGGAAGCGAGGGATGGTTCTTCCCTTCACACCCCTTTCTATCACTTTTGATGAAATCAGATATGCGGTGGACATGCCACAGGAGAAACAAGAGCTTGATCAGGGAACTTGGTACACCTCCAGAAGGTTCCAAAGACTTGTACTTCCCCACAAAAGGATGCCAGTGTGGTGGAGATGGTACTTTTGGATTTGTCCCGTGTCTTGGACCTTATATGGATTGGTTACATCACAATTTGGTGATATAAAAGAACGTATAGAGACTGGAGAGACTGTGGAAGAGTTTGTTAGGAGTTATTTTGGGTATAGAGATGACTTCATAGGCATAGCTGCAGCCGTGCTTGTTGGATTTACATTGCTTTTTGGATTTACCTTTGCCTTCTCAATTAAGGCATTCAATTTCCAAAAGAGATGA 1896 0.4325 MESGELRVASARIGSSSVWRSSGVDVFSGSSRRDDDEQELKWAAIEKLPTYLRMTRGILTEAEGQPTEIDINKLCPLQRKNLVERLVKIAEQDNEKFLLKLRDRIDRVGLEIPTIEVRFEHLNIEAEAHVGSRALPTIFNFCINLLEGFLNSLHLIPSRKKPFTVLHDVSGIIKPKRMTLLLGPPSSGKTTLLLALAGRLEMLAELSRREKAANIKPEPDLDIYMKAAALEGQETNVVTDYIMKILGLEVCADTMVGDDMIRGISGGQKKRVTTGKQKNLLAPHGRFIKQYFLLVCINQMASGLFRFMGAVGRNIIVANTVGSFALLAVMSYVLFESVDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWSHVPPNSTEPLGVKVLKSRGIFPEAYWYWIGVGASIGYMLLFNFLFPLALHYLDPFGTPQALISEEALAERNAGRNEHVIELSPRFKGSSGGLRTHNSHWIENRRSVSSRTLSARVGSIGAIDRNRKRGMVLPFTPLSITFDEIRYAVDMPQEKQELDQGTWYTSRRFQRLVLPHKRMPVWWRWYFWICPVSWTLYGLVTSQFGDIKERIETGETVEEFVRSYFGYRDDFIGIAAAVLVGFTLLFGFTFAFSIKAFNFQKR 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3421 631 Gene3D - 149 277 IPR027417 -
Ssu1g3421 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 270 IPR027417 -
Ssu1g3421 631 Pfam ABC-2 type transporter 284 365 IPR013525 GO:0016020|GO:0140359
Ssu1g3421 631 Pfam Plant PDR ABC transporter associated 370 433 IPR013581 -
Ssu1g3421 631 PANTHER ATP-BINDING CASSETTE TRANSPORTER 200 276 - -
Ssu1g3421 631 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 200 276 - -
Ssu1g3421 631 Pfam ABC-transporter N-terminal 90 141 IPR029481 -
Ssu1g3421 631 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 10 200 - -
Ssu1g3421 631 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 538 631 - -
Ssu1g3421 631 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 285 525 - -
Ssu1g3421 631 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 200 - -
Ssu1g3421 631 PANTHER ATP-BINDING CASSETTE TRANSPORTER 538 631 - -
Ssu1g3421 631 PANTHER ATP-BINDING CASSETTE TRANSPORTER 285 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3421 Ssu-Chr1 87973845 87981206 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3421 K08711 - gmx:100815197 413.305