Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3416 atgGAAAGTGAGAGTGGGATTATGATGATCCcatgttttgatttttgcagGGGTGGGGTGGCATTAGAAGAAGGGAGTGAGGAGTGGAAAGAAATGAGCAAGAAAGTGAGAGAAGCATGTGAGAGTCACGGTTGTTTCCTCTTGATGTGTGATGAGTTCATCCCCAAGGGTGAACGTGAAGAGATGTTTAATGGTCTAATAGCATTGTTTGATTTGCCTGAAGAAACAAAGCAGCAGCATATCAGTCCAAAGCCTTATAGGGGCTACAATGGCAAAAGCCCCATCATTCCCCTCTGTGAAAGCTTTGGGATTGATGATGTTCCTCCCTCAGCTACGGCTGAGGTCTTCACAAACCTCATGTGGCCTCAAGGAAACCCACCTTTCTGTGAGACACTGAAGTCTATGAGCTTAAAGATGCTGGAACTAAGCTTCGTTGTCATGAAAATGATCGTGGAGGGTTATGGCCTTCCCCAGCATTACATTTCAGATATTGAAAACATGAAGAGCTCTAGCAATTCACGATTGATCAAGTACAAATTTCCTAAAACCAGCAACGACTCTGATATTGCCTTGGTGCCTCACACTGACAAAAATGCCTTAACCATTTTATGCCAAAATGAAGTCCAGGGTTTGCAGGTGCTATCCAAAACAGGCAAATGGATTGAATTGGAGATACCCCGAGATGGCTTTGTGGTTATTGTTGGTGATATACTCAAGGCGTGGAGCAATGGGAGGCTTCATGCAGCCACACACAGAGTGGTGATGAGTGGAGACAAAGAGAGGTACTCGTTTGGGCTTTTTGCAATGCCAAAGGAAGAGATAGACATTGAGGTGCCCCGTGAGTTGGTGGATGACAAAATTCATCCTCTCCGTTTTCGTCCATTCAATTATGGAGAGTATTTCTATTACTTTagagagagggaaatgGAAAGTGAGAGTGAGATTATGATGATCCcatgttttgatttttgcagGGGTGGGGTGGCATTAGAAGAGGGGAGTGAGGAGTGGAAAGAAATGAGCAAGAAAGTGAGAGAAGCATGTGAGAGTCACGGTTGCTTCCTCTTGATGTGTGATGAGACCATCCCTAAGGGTGTACGTGATGAACTTTTTCATGGCATGGAAGCATTATTTGATTTGCCTGAAGAAACAAAGCAGCAGCACATCAGTCCAAAGCCTTATAGCAGCTACAATGGCAAGAGCCCCGTCATTCCCCTCTGTGAAAGCTTTGGAATCGATGATGTTCCTTTCTCAGCTACGGCTGAGGCCTTCACAAACCTCATTTGGCCTCAAGGAAACCCACCTTTCTGTGAGACACTGAAGACCATGAGCTTAAAGATGCTAGAACTAAGTTTCTTCGTCCTGAAAATGATTGTGGAGGGTTATGGCCTTCCCCAACATTACATTTCGGATGTTGAAAACATGAAGAGCTCTTGCAATTCACGATTGATCAAGTACAAAGTTCCCGAAGGCAATAATGACTTCGAGACTGCCCTGCTGTCTCACACTGACAAAAATGCCTTAACCATTTTATGTCAAAACGAAGTCCAAGGGCTCCAGGTGTTATTCAAAACAGGCAAATGGATTGAATTGGAGATACCCCAAAATGGCTTAGTGGTCATTGTTGGTGATATACTAaagGCTTGGAGCAATGGGAGGCTTCATGCAGCCACGCACAGAGTGGTGATGAGTGGAGACAAAGAGAGGTACTCGTTTGGGCTTTTTGCAATGCCAAAGGAAGAGATGGACATCGAGGTGCCCCGTGAGTTGGTGGATGACAAAATTCATCCCCTTCGTTATCGTCCATTCAACTATGGAGAGTACATCTGTTACTTTGTTTCAAATCTCAAAGAAAATGCTCTTGAAGTGTTTGCAGGTCTTTGA 1884 0.4326 MESESGIMMIPCFDFCRGGVALEEGSEEWKEMSKKVREACESHGCFLLMCDEFIPKGEREEMFNGLIALFDLPEETKQQHISPKPYRGYNGKSPIIPLCESFGIDDVPPSATAEVFTNLMWPQGNPPFCETLKSMSLKMLELSFVVMKMIVEGYGLPQHYISDIENMKSSSNSRLIKYKFPKTSNDSDIALVPHTDKNALTILCQNEVQGLQVLSKTGKWIELEIPRDGFVVIVGDILKAWSNGRLHAATHRVVMSGDKERYSFGLFAMPKEEIDIEVPRELVDDKIHPLRFRPFNYGEYFYYFREREMESESEIMMIPCFDFCRGGVALEEGSEEWKEMSKKVREACESHGCFLLMCDETIPKGVRDELFHGMEALFDLPEETKQQHISPKPYSSYNGKSPVIPLCESFGIDDVPFSATAEAFTNLIWPQGNPPFCETLKTMSLKMLELSFFVLKMIVEGYGLPQHYISDVENMKSSCNSRLIKYKVPEGNNDFETALLSHTDKNALTILCQNEVQGLQVLFKTGKWIELEIPQNGLVVIVGDILKAWSNGRLHAATHRVVMSGDKERYSFGLFAMPKEEMDIEVPRELVDDKIHPLRYRPFNYGEYICYFVSNLKENALEVFAGL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3416 627 Pfam non-haem dioxygenase in morphine synthesis N-terminal 10 91 IPR026992 -
Ssu1g3416 627 Pfam non-haem dioxygenase in morphine synthesis N-terminal 318 399 IPR026992 -
Ssu1g3416 627 SUPERFAMILY Clavaminate synthase-like 313 615 - -
Ssu1g3416 627 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 475 578 IPR005123 -
Ssu1g3416 627 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 270 IPR005123 -
Ssu1g3416 627 Pfam 2OG-Fe(II) oxygenase superfamily 484 576 IPR044861 -
Ssu1g3416 627 Pfam 2OG-Fe(II) oxygenase superfamily 176 268 IPR044861 -
Ssu1g3416 627 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 312 626 - -
Ssu1g3416 627 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 5 314 - -
Ssu1g3416 627 Gene3D - 10 317 IPR027443 -
Ssu1g3416 627 Gene3D - 318 624 IPR027443 -
Ssu1g3416 627 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE AOP1-RELATED 312 626 - -
Ssu1g3416 627 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE AOP1-RELATED 5 314 - -
Ssu1g3416 627 SUPERFAMILY Clavaminate synthase-like 7 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3416 Ssu-Chr1 87831079 87856485 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3416 316 608 Glycosyltransferase AT5G59530 25.081 4.07e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3416 - - gmx:100817159 540.806