Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3413 ATGCTAGAACTATGCTTCCTCGTCCTGAAAATGATTGTAGAAGGTTATGGCCTTCCCCAGCATTACATTTCGGATGTTGAAACACGGAAGAGCTCTAGCTATTTACGATCGATCAAGTACAAAGTTTTGAAAAGCAACATTGACTCTGAGATTGCCCTTCTACTTCACACTGACGAAAGTGCCTTAACCATTTTATGCCAAAATGAAGTCCAGGGTGTGCAGGTGCTATCCAAAACAGGCAaatggattttattaaaaataccccAAAATGGCTTTGTGGTTACTATTGGTGATATACTAAAgGCATGGAGCAATGGCAGGCTTCATGCAGTGACACACAATGTAGTGATGAGTGGAAACAAAGAGAGGTACTCGTTTGGGTTTTTTGCAATGCCAAAGGAAGAGATGTACATTGAAGTGCCCTGTGAGTTGGTGGACGGTAATATTCATCCTCTCCGTTATCGTCCATTCAATTAA 477 0.3983 MLELCFLVLKMIVEGYGLPQHYISDVETRKSSSYLRSIKYKVLKSNIDSEIALLLHTDESALTILCQNEVQGVQVLSKTGKWILLKIPQNGFVVTIGDILKAWSNGRLHAVTHNVVMSGNKERYSFGFFAMPKEEMYIEVPCELVDGNIHPLRYRPFN 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3413 158 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE AOP1-RELATED 1 158 - -
Ssu1g3413 158 Pfam 2OG-Fe(II) oxygenase superfamily 40 131 IPR044861 -
Ssu1g3413 158 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 1 158 - -
Ssu1g3413 158 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 30 132 IPR005123 -
Ssu1g3413 158 SUPERFAMILY Clavaminate synthase-like 1 157 - -
Ssu1g3413 158 Gene3D - 1 158 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3413 Ssu-Chr1 87805825 87806391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3413 1 155 Glycosyltransferase AT5G59530 25.478 5.00e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3413 - - gmx:100790408 240.35